{"id":"https://openalex.org/W20374847","doi":"https://doi.org/10.1007/978-3-319-04483-5_6","title":"Cells as Machines: Towards Deciphering Biochemical Programs in the Cell","display_name":"Cells as Machines: Towards Deciphering Biochemical Programs in the Cell","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W20374847","doi":"https://doi.org/10.1007/978-3-319-04483-5_6","mag":"20374847"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-04483-5_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-04483-5_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/hal-01103291","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000983836","display_name":"Fran\u00e7ois Fages","orcid":"https://orcid.org/0000-0001-5650-8266"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Fran\u00e7ois Fages","raw_affiliation_strings":["Inria Paris-Rocquencourt, EPI Contraintes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inria Paris-Rocquencourt, EPI Contraintes, France","institution_ids":["https://openalex.org/I1326498283"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5000983836"],"corresponding_institution_ids":["https://openalex.org/I1326498283"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.518,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.63088512,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"50","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7415422797203064},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.7066732048988342},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.678805947303772},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.6041818261146545},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5879509449005127},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.5371030569076538},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4734494388103485},{"id":"https://openalex.org/keywords/decipher","display_name":"DECIPHER","score":0.4385632872581482},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3729678988456726},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3729556202888489},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3293091654777527},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3001070022583008},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2971523702144623},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23299112915992737},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1756989061832428}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7415422797203064},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.7066732048988342},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.678805947303772},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.6041818261146545},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5879509449005127},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.5371030569076538},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4734494388103485},{"id":"https://openalex.org/C164614171","wikidata":"https://www.wikidata.org/wiki/Q5204775","display_name":"DECIPHER","level":2,"score":0.4385632872581482},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3729678988456726},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3729556202888489},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3293091654777527},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3001070022583008},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2971523702144623},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23299112915992737},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1756989061832428},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-319-04483-5_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-04483-5_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.651.9069","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.651.9069","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://lifeware.inria.fr/%7Efages/Papers/Fages13icdcit.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-01103291v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01103291","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ICDCIT 2014 - 10th International Conference Distributed Computing and Internet Technology, Feb 2014, Bhubanesvar, India. pp.50 - 67, ⟨10.1007/978-3-319-04483-5_6⟩","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-01103291v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01103291","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ICDCIT 2014 - 10th International Conference Distributed Computing and Internet Technology, Feb 2014, Bhubanesvar, India. pp.50 - 67, ⟨10.1007/978-3-319-04483-5_6⟩","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W144108990","https://openalex.org/W174102300","https://openalex.org/W1489391022","https://openalex.org/W1540051489","https://openalex.org/W1564288260","https://openalex.org/W1901368291","https://openalex.org/W1964012101","https://openalex.org/W1975954590","https://openalex.org/W1978486653","https://openalex.org/W1979833590","https://openalex.org/W1986649132","https://openalex.org/W1993283358","https://openalex.org/W1996195324","https://openalex.org/W1999815039","https://openalex.org/W2003871372","https://openalex.org/W2004182744","https://openalex.org/W2007006124","https://openalex.org/W2011835017","https://openalex.org/W2038264484","https://openalex.org/W2042321087","https://openalex.org/W2043100293","https://openalex.org/W2055378322","https://openalex.org/W2066322491","https://openalex.org/W2069157810","https://openalex.org/W2081781433","https://openalex.org/W2090675676","https://openalex.org/W2102643016","https://openalex.org/W2102653059","https://openalex.org/W2103017472","https://openalex.org/W2103627208","https://openalex.org/W2106190666","https://openalex.org/W2106411386","https://openalex.org/W2109427669","https://openalex.org/W2110796675","https://openalex.org/W2112036188","https://openalex.org/W2112651905","https://openalex.org/W2117525659","https://openalex.org/W2121149194","https://openalex.org/W2122529434","https://openalex.org/W2124236793","https://openalex.org/W2133552211","https://openalex.org/W2146367686","https://openalex.org/W2150908245","https://openalex.org/W2168569373","https://openalex.org/W2169804422","https://openalex.org/W2170592382","https://openalex.org/W2412839122","https://openalex.org/W2749959812","https://openalex.org/W2913004508","https://openalex.org/W2913459036","https://openalex.org/W4241430732"],"related_works":["https://openalex.org/W2024161258","https://openalex.org/W1911418903","https://openalex.org/W2338895903","https://openalex.org/W4362467570","https://openalex.org/W3044523069","https://openalex.org/W2136248167","https://openalex.org/W2126646394","https://openalex.org/W2057769265","https://openalex.org/W19581480","https://openalex.org/W1987445442"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}