{"id":"https://openalex.org/W9973996","doi":"https://doi.org/10.1007/978-3-319-02624-4_1","title":"The Trouble with Long-Range Base Pairs in RNA Folding","display_name":"The Trouble with Long-Range Base Pairs in RNA Folding","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W9973996","doi":"https://doi.org/10.1007/978-3-319-02624-4_1","mag":"9973996"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-02624-4_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-02624-4_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003442431","display_name":"Fabian Amman","orcid":"https://orcid.org/0000-0002-8646-859X"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian Amman","raw_affiliation_strings":["Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Stephan H. Bernhart","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stephan H. Bernhart","raw_affiliation_strings":["Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005070498","display_name":"Gero Doose","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gero Doose","raw_affiliation_strings":["Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany","LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011771355","display_name":"Ivo L. Hofacker","orcid":"https://orcid.org/0000-0001-7132-0800"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I180519160","display_name":"Copenhagen Business School","ror":"https://ror.org/04sppb023","country_code":"DK","type":"education","lineage":["https://openalex.org/I180519160"]},{"id":"https://openalex.org/I2801150652","display_name":"Frederiksberg Hospital","ror":"https://ror.org/00d264c35","country_code":"DK","type":"healthcare","lineage":["https://openalex.org/I2801150652"]}],"countries":["AT","DK"],"is_corresponding":false,"raw_author_name":"Ivo L. Hofacker","raw_affiliation_strings":["Bioinformatics and Computational Biology research group, University of Vienna, 1090 W\u00e4hringerstra\u00dfe 17, Vienna, Austria","Dept. Theoretical Chemistry, Univ. Vienna, W\u00e4hringerstr. 17, Wien, Austria","RTH, Univ. Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, Frederiksberg C, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biology research group, University of Vienna, 1090 W\u00e4hringerstra\u00dfe 17, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Dept. Theoretical Chemistry, Univ. Vienna, W\u00e4hringerstr. 17, Wien, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"RTH, Univ. Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, Frederiksberg C, Denmark","institution_ids":["https://openalex.org/I180519160","https://openalex.org/I2801150652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089171871","display_name":"Jing Qin","orcid":"https://orcid.org/0000-0002-8302-0968"},"institutions":[{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jing Qin","raw_affiliation_strings":["Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany","MPI Mathematics in the Sciences, Inselstr. 22, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"MPI Mathematics in the Sciences, Inselstr. 22, Leipzig, Germany","institution_ids":["https://openalex.org/I4210091327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103135268","display_name":"Sebastian Will","orcid":"https://orcid.org/0000-0002-2376-9205"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Will","raw_affiliation_strings":["Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. Computer Science, and Interdisciplinary Center for Bioinformatics, Univ. Leipzig, H\u00e4rtelstr. 16-18, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":4.1042,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.92150822,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/predictability","display_name":"Predictability","score":0.680234432220459},{"id":"https://openalex.org/keywords/base-pair","display_name":"Base pair","score":0.664751410484314},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5985202789306641},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5900977253913879},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5785188674926758},{"id":"https://openalex.org/keywords/base","display_name":"Base (topology)","score":0.5758633613586426},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5607128739356995},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4923804998397827},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.37970516085624695},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3606647253036499},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.30570054054260254},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2677316963672638},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.13188663125038147},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12582460045814514},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.112415611743927},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.10356906056404114},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.0950503945350647},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08256831765174866},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.07607299089431763}],"concepts":[{"id":"https://openalex.org/C197640229","wikidata":"https://www.wikidata.org/wiki/Q2534066","display_name":"Predictability","level":2,"score":0.680234432220459},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.664751410484314},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5985202789306641},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5900977253913879},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5785188674926758},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.5758633613586426},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5607128739356995},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4923804998397827},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.37970516085624695},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3606647253036499},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.30570054054260254},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2677316963672638},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.13188663125038147},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12582460045814514},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.112415611743927},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.10356906056404114},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0950503945350647},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08256831765174866},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.07607299089431763},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-02624-4_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-02624-4_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8999999761581421,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1559047570","https://openalex.org/W1585306636","https://openalex.org/W1597123018","https://openalex.org/W1972227095","https://openalex.org/W1983068137","https://openalex.org/W1984675364","https://openalex.org/W1987778013","https://openalex.org/W1990215824","https://openalex.org/W2007472611","https://openalex.org/W2007753043","https://openalex.org/W2024499099","https://openalex.org/W2030106788","https://openalex.org/W2048814860","https://openalex.org/W2058832897","https://openalex.org/W2061014998","https://openalex.org/W2064714768","https://openalex.org/W2073858449","https://openalex.org/W2086561953","https://openalex.org/W2102225325","https://openalex.org/W2102833079","https://openalex.org/W2113816707","https://openalex.org/W2118494021","https://openalex.org/W2128109027","https://openalex.org/W2130748131","https://openalex.org/W2134453550","https://openalex.org/W2148346447","https://openalex.org/W2151203827","https://openalex.org/W2151994495","https://openalex.org/W2162224067","https://openalex.org/W2165238410","https://openalex.org/W2477408078","https://openalex.org/W4245270879","https://openalex.org/W4251866352"],"related_works":["https://openalex.org/W1979242040","https://openalex.org/W576226539","https://openalex.org/W2133070749","https://openalex.org/W2808896479","https://openalex.org/W1978187259","https://openalex.org/W2889983362","https://openalex.org/W1988380385","https://openalex.org/W2071138881","https://openalex.org/W1988840281","https://openalex.org/W2097474307"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
