{"id":"https://openalex.org/W1763853145","doi":"https://doi.org/10.1007/978-3-319-02432-5_31","title":"Accurate Profiling of Microbial Communities from Massively Parallel Sequencing Using Convex Optimization","display_name":"Accurate Profiling of Microbial Communities from Massively Parallel Sequencing Using Convex Optimization","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W1763853145","doi":"https://doi.org/10.1007/978-3-319-02432-5_31","mag":"1763853145"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-02432-5_31","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-02432-5_31","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1309.6919","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053795232","display_name":"Or Zuk","orcid":"https://orcid.org/0000-0001-7587-2944"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I160992636","display_name":"Toyota Technological Institute at Chicago","ror":"https://ror.org/02sn5gb64","country_code":"US","type":"education","lineage":["https://openalex.org/I160992636"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Or Zuk","raw_affiliation_strings":["Broad Institute of MIT and Harvard, USA","Toyota Technological Institute at Chicago, USA","Broad Institute of MIT and Harvard, USA and Toyota Technological Institute at Chicago, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard, USA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"Toyota Technological Institute at Chicago, USA","institution_ids":["https://openalex.org/I160992636"]},{"raw_affiliation_string":"Broad Institute of MIT and Harvard, USA and Toyota Technological Institute at Chicago, USA#TAB#","institution_ids":["https://openalex.org/I160992636","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100781175","display_name":"Amnon Amir","orcid":"https://orcid.org/0000-0002-0903-6056"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Amnon Amir","raw_affiliation_strings":["Department of Physics of Complex Systems, Weizmann Institute of Science, Israel","Department of Physics of Complex Systems, Weizmann Institute of Science, Israel#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics of Complex Systems, Weizmann Institute of Science, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"Department of Physics of Complex Systems, Weizmann Institute of Science, Israel#TAB#","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011375809","display_name":"Amit Zeisel","orcid":"https://orcid.org/0000-0002-2424-9279"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Amit Zeisel","raw_affiliation_strings":["Department of Physics of Complex Systems, Weizmann Institute of Science, Israel","Department of Physics of Complex Systems, Weizmann Institute of Science, Israel#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics of Complex Systems, Weizmann Institute of Science, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"Department of Physics of Complex Systems, Weizmann Institute of Science, Israel#TAB#","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109213302","display_name":"Ohad Shamir","orcid":null},"institutions":[{"id":"https://openalex.org/I4210164937","display_name":"Microsoft Research (United Kingdom)","ror":"https://ror.org/05k87vq12","country_code":"GB","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I4400600948","display_name":"Microsoft Research New England (United States)","ror":"https://ror.org/010wkqn50","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4400600948"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Ohad Shamir","raw_affiliation_strings":["Microsoft Research, UK","Microsoft Research, New England"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microsoft Research, UK","institution_ids":["https://openalex.org/I4210164937"]},{"raw_affiliation_string":"Microsoft Research, New England","institution_ids":["https://openalex.org/I4210164937","https://openalex.org/I4400600948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086404465","display_name":"Noam Shental","orcid":"https://orcid.org/0000-0001-9645-3773"},"institutions":[{"id":"https://openalex.org/I164950643","display_name":"Open University of Israel","ror":"https://ror.org/027z64205","country_code":"IL","type":"education","lineage":["https://openalex.org/I164950643"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Noam Shental","raw_affiliation_strings":["Department of Computer Science, The Open University of Israel, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The Open University of Israel, Israel","institution_ids":["https://openalex.org/I164950643"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.1973,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.80864787,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"279","last_page":"297"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5792965292930603},{"id":"https://openalex.org/keywords/identifiability","display_name":"Identifiability","score":0.5224660634994507},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4658770263195038},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4631222188472748},{"id":"https://openalex.org/keywords/optimization-problem","display_name":"Optimization problem","score":0.4549108147621155},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.44825220108032227},{"id":"https://openalex.org/keywords/convex-optimization","display_name":"Convex optimization","score":0.434165358543396},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.3686864376068115},{"id":"https://openalex.org/keywords/regular-polygon","display_name":"Regular polygon","score":0.34483224153518677},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2934885323047638},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.1265658438205719},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.10652798414230347}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5792965292930603},{"id":"https://openalex.org/C122770356","wikidata":"https://www.wikidata.org/wiki/Q1656753","display_name":"Identifiability","level":2,"score":0.5224660634994507},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4658770263195038},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4631222188472748},{"id":"https://openalex.org/C137836250","wikidata":"https://www.wikidata.org/wiki/Q984063","display_name":"Optimization problem","level":2,"score":0.4549108147621155},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.44825220108032227},{"id":"https://openalex.org/C157972887","wikidata":"https://www.wikidata.org/wiki/Q463359","display_name":"Convex optimization","level":3,"score":0.434165358543396},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.3686864376068115},{"id":"https://openalex.org/C112680207","wikidata":"https://www.wikidata.org/wiki/Q714886","display_name":"Regular polygon","level":2,"score":0.34483224153518677},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2934885323047638},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.1265658438205719},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.10652798414230347},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1007/978-3-319-02432-5_31","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-02432-5_31","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:arXiv.org:1309.6919","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1309.6919","pdf_url":"https://arxiv.org/pdf/1309.6919","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.639.3691","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.639.3691","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.openu.ac.il/home/shental/papers/ZukSPIRE2013.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.719.9507","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.719.9507","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://pluto.huji.ac.il/%7Eorzu/publications/Zuk_et_al_SPIRE13.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.754.6696","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.754.6696","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/1309.6919.pdf","raw_type":"text"},{"id":"doi:10.48550/arxiv.1309.6919","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1309.6919","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"},{"id":"mag:1763853145","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1309.6919","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1309.6919","pdf_url":"https://arxiv.org/pdf/1309.6919","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.7300000190734863}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1510073064","https://openalex.org/W1988925586","https://openalex.org/W2017425843","https://openalex.org/W2019094601","https://openalex.org/W2034153329","https://openalex.org/W2037540348","https://openalex.org/W2046476040","https://openalex.org/W2051322058","https://openalex.org/W2097600042","https://openalex.org/W2099878244","https://openalex.org/W2101008719","https://openalex.org/W2113386140","https://openalex.org/W2113642685","https://openalex.org/W2130075028","https://openalex.org/W2131026689","https://openalex.org/W2145664556","https://openalex.org/W2151566934","https://openalex.org/W2153138305","https://openalex.org/W2155066423","https://openalex.org/W2169330513","https://openalex.org/W2170024099","https://openalex.org/W2178221445","https://openalex.org/W2616754551","https://openalex.org/W4249667877"],"related_works":["https://openalex.org/W2092464631","https://openalex.org/W2249886417","https://openalex.org/W2126951716","https://openalex.org/W2140638310","https://openalex.org/W2951475949","https://openalex.org/W2907003623","https://openalex.org/W959458919","https://openalex.org/W2462499727","https://openalex.org/W3158374272","https://openalex.org/W2561334269","https://openalex.org/W2003603552","https://openalex.org/W2086632933","https://openalex.org/W3100285002","https://openalex.org/W2790597304","https://openalex.org/W2187434839","https://openalex.org/W2783917378","https://openalex.org/W2912545752","https://openalex.org/W2952880286","https://openalex.org/W1592504526","https://openalex.org/W2525876451"],"abstract_inverted_index":null,"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-03T08:13:44.112507","created_date":"2025-10-10T00:00:00"}
