{"id":"https://openalex.org/W7167570571","doi":"https://doi.org/10.1007/978-3-032-30813-9_47","title":"Biological Plausibility Assessment of Viral Sequences Generated by a Genomic Language Model","display_name":"Biological Plausibility Assessment of Viral Sequences Generated by a Genomic Language Model","publication_year":2026,"publication_date":"2026-07-07","ids":{"openalex":"https://openalex.org/W7167570571","doi":"https://doi.org/10.1007/978-3-032-30813-9_47"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-032-30813-9_47","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-30813-9_47","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5120794639","display_name":"Pablo Arozarena Donelli","orcid":"https://orcid.org/0009-0002-3188-2504"},"institutions":[{"id":"https://openalex.org/I123338534","display_name":"Universit\u00e0 degli Studi del Piemonte Orientale \u201cAmedeo Avogadro\u201d","ror":"https://ror.org/04387x656","country_code":"IT","type":"education","lineage":["https://openalex.org/I123338534"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Pablo Arozarena Donelli","raw_affiliation_strings":["Computer Science Institute, DISIT, University of Piemonte Orientale, Alessandria, Italy"],"raw_orcid":"https://orcid.org/0009-0002-3188-2504","affiliations":[{"raw_affiliation_string":"Computer Science Institute, DISIT, University of Piemonte Orientale, Alessandria, Italy","institution_ids":["https://openalex.org/I123338534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093116844","display_name":"Simone Rancati","orcid":"https://orcid.org/0009-0002-4405-1697"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simone Rancati","raw_affiliation_strings":["BMI lab \u201cMario Stefanelli\u201d, Department of Electric, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy"],"raw_orcid":"https://orcid.org/0009-0002-4405-1697","affiliations":[{"raw_affiliation_string":"BMI lab \u201cMario Stefanelli\u201d, Department of Electric, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044714123","display_name":"Giovanna Nicora","orcid":"https://orcid.org/0000-0001-7007-0862"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanna Nicora","raw_affiliation_strings":["BMI lab \u201cMario Stefanelli\u201d, Department of Electric, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy"],"raw_orcid":"https://orcid.org/0000-0001-7007-0862","affiliations":[{"raw_affiliation_string":"BMI lab \u201cMario Stefanelli\u201d, Department of Electric, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050932220","display_name":"Riccardo Bellazzi","orcid":"https://orcid.org/0000-0002-6974-9808"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Bellazzi","raw_affiliation_strings":["BMI lab \u201cMario Stefanelli\u201d, Department of Electric, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy"],"raw_orcid":"https://orcid.org/0000-0002-6974-9808","affiliations":[{"raw_affiliation_string":"BMI lab \u201cMario Stefanelli\u201d, Department of Electric, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090028219","display_name":"Enea Parimbelli","orcid":"https://orcid.org/0000-0003-0679-828X"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Enea Parimbelli","raw_affiliation_strings":["BMI lab \u201cMario Stefanelli\u201d, Department of Electric, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy"],"raw_orcid":"https://orcid.org/0000-0003-0679-828X","affiliations":[{"raw_affiliation_string":"BMI lab \u201cMario Stefanelli\u201d, Department of Electric, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032023872","display_name":"Luigi Portinale","orcid":"https://orcid.org/0000-0002-6053-4667"},"institutions":[{"id":"https://openalex.org/I123338534","display_name":"Universit\u00e0 degli Studi del Piemonte Orientale \u201cAmedeo Avogadro\u201d","ror":"https://ror.org/04387x656","country_code":"IT","type":"education","lineage":["https://openalex.org/I123338534"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luigi Portinale","raw_affiliation_strings":["Computer Science Institute, DISIT, University of Piemonte Orientale, Alessandria, Italy"],"raw_orcid":"https://orcid.org/0000-0002-6053-4667","affiliations":[{"raw_affiliation_string":"Computer Science Institute, DISIT, University of Piemonte Orientale, Alessandria, Italy","institution_ids":["https://openalex.org/I123338534"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5120794639"],"corresponding_institution_ids":["https://openalex.org/I123338534"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"254","last_page":"258"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.2556999921798706,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.2556999921798706,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.1354999989271164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.11240000277757645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.5468999743461609},{"id":"https://openalex.org/keywords/novelty","display_name":"Novelty","score":0.4415999948978424},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.43299999833106995},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.42410001158714294},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.4007999897003174},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.3806000053882599},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.3668999969959259},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.36629998683929443},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.3547999858856201}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7322999835014343},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.5468999743461609},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5329999923706055},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4812000095844269},{"id":"https://openalex.org/C2778738651","wikidata":"https://www.wikidata.org/wiki/Q16546687","display_name":"Novelty","level":2,"score":0.4415999948978424},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.43299999833106995},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.42410001158714294},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.4007999897003174},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39719998836517334},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.3806000053882599},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.3668999969959259},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.36629998683929443},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.3547999858856201},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.3522999882698059},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.3384999930858612},{"id":"https://openalex.org/C2780902518","wikidata":"https://www.wikidata.org/wiki/Q6033780","display_name":"Inheritance (genetic algorithm)","level":3,"score":0.32269999384880066},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.30799999833106995},{"id":"https://openalex.org/C163836022","wikidata":"https://www.wikidata.org/wiki/Q6771326","display_name":"Markov model","level":3,"score":0.30570000410079956},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.29829999804496765},{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.2955000102519989},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.2791999876499176},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.2752000093460083},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.27469998598098755},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2685999870300293},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.25859999656677246}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-032-30813-9_47","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-30813-9_47","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8491986989974976,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W2142678478","https://openalex.org/W2795964999","https://openalex.org/W3127238141","https://openalex.org/W3177828909","https://openalex.org/W4224865640","https://openalex.org/W4386923826","https://openalex.org/W4404349982","https://openalex.org/W4404821554","https://openalex.org/W4412884821"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2026-07-08T00:00:00"}
