{"id":"https://openalex.org/W7163827876","doi":"https://doi.org/10.1007/978-3-032-28110-4_8","title":"The AnIML Ontology: Enabling Semantic Interoperability for\u00a0Large-Scale Experimental Data in\u00a0Interconnected Scientific Labs","display_name":"The AnIML Ontology: Enabling Semantic Interoperability for\u00a0Large-Scale Experimental Data in\u00a0Interconnected Scientific Labs","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W7163827876","doi":"https://doi.org/10.1007/978-3-032-28110-4_8"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-032-28110-4_8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-032-28110-4_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1007/978-3-032-28110-4_8","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5138098199","display_name":"Wilf Morlidge","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wilf Morlidge","raw_affiliation_strings":["School of Computer Science and Informatics, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138086739","display_name":"Elliott Watkiss-Leek","orcid":"https://orcid.org/0009-0002-9284-6590"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Elliott Watkiss-Leek","raw_affiliation_strings":["School of Computer Science and Informatics, University of Liverpool, Liverpool, UK"],"raw_orcid":"https://orcid.org/0009-0002-9284-6590","affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114534289","display_name":"George Hannah","orcid":"https://orcid.org/0000-0002-3218-4559"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"George Hannah","raw_affiliation_strings":["School of Computer Science and Informatics, University of Liverpool, Liverpool, UK"],"raw_orcid":"https://orcid.org/0000-0002-3218-4559","affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5132893367","display_name":"Harry Rostron","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Harry Rostron","raw_affiliation_strings":["Unilever Plc. Materials Innovation Factory, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unilever Plc. Materials Innovation Factory, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138072069","display_name":"Andrew Ng","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Ng","raw_affiliation_strings":["Unilever Plc. Materials Innovation Factory, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unilever Plc. Materials Innovation Factory, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5132901553","display_name":"Ewan Johnson","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ewan Johnson","raw_affiliation_strings":["Unilever Plc. Materials Innovation Factory, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unilever Plc. Materials Innovation Factory, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138102451","display_name":"Andrew Mitchell","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Mitchell","raw_affiliation_strings":["Unilever Plc. Materials Innovation Factory, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unilever Plc. Materials Innovation Factory, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024107224","display_name":"Terry R. Payne","orcid":"https://orcid.org/0000-0002-0106-8731"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Terry R. Payne","raw_affiliation_strings":["School of Computer Science and Informatics, University of Liverpool, Liverpool, UK"],"raw_orcid":"https://orcid.org/0000-0002-0106-8731","affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136560736","display_name":"Valentina Tamma","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Valentina Tamma","raw_affiliation_strings":["School of Computer Science and Informatics, University of Liverpool, Liverpool, UK"],"raw_orcid":"https://orcid.org/0000-0002-1320-610X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5138093758","display_name":"Jacopo de Berardinis","orcid":"https://orcid.org/0000-0001-6770-1969"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jacopo de Berardinis","raw_affiliation_strings":["School of Computer Science and Informatics, University of Liverpool, Liverpool, UK"],"raw_orcid":"https://orcid.org/0000-0001-6770-1969","affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5136560736","https://openalex.org/A5138093758"],"corresponding_institution_ids":["https://openalex.org/I146655781"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":{"value":5000,"currency":"EUR","value_usd":5392},"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"137","last_page":"155"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.4072999954223633,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.4072999954223633,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.14149999618530273,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.0812000036239624,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7148000001907349},{"id":"https://openalex.org/keywords/experimental-data","display_name":"Experimental data","score":0.4887999892234802},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.311599999666214},{"id":"https://openalex.org/keywords/semantic-interoperability","display_name":"Semantic interoperability","score":0.3034000098705292},{"id":"https://openalex.org/keywords/data-modeling","display_name":"Data modeling","score":0.28360000252723694}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8389000296592712},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7148000001907349},{"id":"https://openalex.org/C55037315","wikidata":"https://www.wikidata.org/wiki/Q5421151","display_name":"Experimental data","level":2,"score":0.4887999892234802},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.350600004196167},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.311599999666214},{"id":"https://openalex.org/C192800085","wikidata":"https://www.wikidata.org/wiki/Q5258530","display_name":"Semantic interoperability","level":3,"score":0.3034000098705292},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3003000020980835},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.29670000076293945},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.28360000252723694},{"id":"https://openalex.org/C3018233652","wikidata":"https://www.wikidata.org/wiki/Q101965","display_name":"Experimental research","level":2,"score":0.2815999984741211},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.27880001068115234},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2728999853134155},{"id":"https://openalex.org/C90312973","wikidata":"https://www.wikidata.org/wiki/Q7449052","display_name":"Semantic data model","level":2,"score":0.2590000033378601},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2515999972820282}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-032-28110-4_8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-032-28110-4_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.1007/978-3-032-28110-4_8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-032-28110-4_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W50022627","https://openalex.org/W156285755","https://openalex.org/W224398829","https://openalex.org/W403298716","https://openalex.org/W1896260025","https://openalex.org/W1990890881","https://openalex.org/W2007839700","https://openalex.org/W2042037135","https://openalex.org/W2098936704","https://openalex.org/W2103017472","https://openalex.org/W2110279208","https://openalex.org/W2113142309","https://openalex.org/W2116238734","https://openalex.org/W2118100588","https://openalex.org/W2125176662","https://openalex.org/W2125904022","https://openalex.org/W2128226234","https://openalex.org/W2147521594","https://openalex.org/W2150365753","https://openalex.org/W2155249637","https://openalex.org/W2290712282","https://openalex.org/W2594678652","https://openalex.org/W2609566364","https://openalex.org/W2975047661","https://openalex.org/W3034245601","https://openalex.org/W3035434194","https://openalex.org/W3158377612","https://openalex.org/W3183861986","https://openalex.org/W3215651715","https://openalex.org/W3216256135","https://openalex.org/W4220666269","https://openalex.org/W4220791129","https://openalex.org/W4281661209","https://openalex.org/W4283819412","https://openalex.org/W4384023572","https://openalex.org/W4388144120","https://openalex.org/W4389109078","https://openalex.org/W4391132312","https://openalex.org/W4392593369","https://openalex.org/W4406870075","https://openalex.org/W4410880079","https://openalex.org/W4410880207"],"related_works":[],"abstract_inverted_index":{"Achieving":[0],"semantic":[1],"interoperability":[2,61],"across":[3,54],"heterogeneous":[4],"experimental":[5,42],"data":[6],"systems":[7],"remains":[8],"a":[9,22,124,142],"major":[10],"barrier":[11],"to":[12,67,96,153],"data-driven":[13,127],"scientific":[14],"discovery.":[15],"The":[16,103],"Analytical":[17],"Information":[18],"Markup":[19],"Language":[20],"(AnIML),":[21],"flexible":[23],"XML-based":[24],"standard":[25],"for":[26,38],"analytical":[27],"chemistry":[28],"and":[29,40,88,100,141,157],"biology,":[30],"is":[31],"increasingly":[32],"used":[33],"in":[34],"industrial":[35],"R&D":[36],"labs":[37],"managing":[39],"exchanging":[41],"data.":[43],"However,":[44],"the":[45,48,60,62,74,84,92,121],"expressivity":[46],"of":[47,86,129],"XML":[49],"schema":[50,64],"permits":[51],"divergent":[52],"interpretations":[53],"stakeholders,":[55],"introducing":[56],"inconsistencies":[57],"that":[58,82],"undermine":[59],"AnIML":[63,75,87,131],"was":[65,105],"designed":[66],"support.":[68],"In":[69],"this":[70],"paper,":[71],"we":[72],"present":[73],"Ontology":[76],",":[77],"an":[78,108],"OWL":[79],"2":[80],"ontology":[81,104,117,122],"formalises":[83],"semantics":[85],"aligns":[89],"it":[90],"with":[91,115],"Allotrope":[93],"Data":[94],"Format":[95],"support":[97],"future":[98],"cross-system":[99],"cross-lab":[101],"interoperability.":[102],"developed":[106],"using":[107],"expert-in-the-loop":[109],"approach":[110],"combining":[111],"LLM-assisted":[112],"requirement":[113],"elicitation":[114],"collaborative":[116],"engineering.":[118],"We":[119],"validate":[120],"through":[123],"multi-layered":[125],"approach:":[126],"transformation":[128],"real-world":[130],"files":[132],"into":[133],"knowledge":[134],"graphs,":[135],"competency":[136,150],"question":[137],"verification":[138],"via":[139,159],"SPARQL,":[140],"novel":[143],"validation":[144],"protocol":[145],"based":[146],"on":[147],"adversarial":[148],"negative":[149],"questions":[151],"mapped":[152],"established":[154],"ontological":[155],"anti-patterns":[156],"enforced":[158],"SHACL":[160],"constraints.":[161]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2026-06-08T00:00:00"}
