{"id":"https://openalex.org/W4407024773","doi":"https://doi.org/10.1007/978-3-032-26891-4_7","title":"Theoretical and\u00a0Empirical Performance of\u00a0Pseudo-likelihood-Based Bayesian Inference of\u00a0Species Trees Under the\u00a0Multispecies Coalescent","display_name":"Theoretical and\u00a0Empirical Performance of\u00a0Pseudo-likelihood-Based Bayesian Inference of\u00a0Species Trees Under the\u00a0Multispecies Coalescent","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W4407024773","doi":"https://doi.org/10.1007/978-3-032-26891-4_7"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-032-26891-4_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-26891-4_7","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.1101/2025.01.28.635282","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025638647","display_name":"Nicolae Sapoval","orcid":"https://orcid.org/0000-0002-0736-5075"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicolae Sapoval","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, TX, 77005, USA","Rice Univeristy"],"raw_orcid":"https://orcid.org/0000-0002-0736-5075","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Rice Univeristy","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101844279","display_name":"Zejian Liu","orcid":"https://orcid.org/0009-0002-2713-1468"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zejian Liu","raw_affiliation_strings":["Department of Statistics, Rice University, Houston, TX, 77005, USA","Rice University"],"raw_orcid":"https://orcid.org/0009-0002-2713-1468","affiliations":[{"raw_affiliation_string":"Department of Statistics, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Rice University","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093671814","display_name":"Mehrdad Tamiji","orcid":"https://orcid.org/0009-0002-6296-0501"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehrdad Tamiji","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, TX, 77005, USA","Rice University"],"raw_orcid":"https://orcid.org/0009-0002-6296-0501","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Rice University","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100457556","display_name":"Meng Li","orcid":"https://orcid.org/0000-0003-2123-2444"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meng Li","raw_affiliation_strings":["Department of Statistics, Rice University, Houston, TX, 77005, USA","Rice University"],"raw_orcid":"https://orcid.org/0000-0003-2123-2444","affiliations":[{"raw_affiliation_string":"Department of Statistics, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Rice University","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080534085","display_name":"Luay Nakhleh","orcid":"https://orcid.org/0000-0003-3288-6769"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Luay Nakhleh","raw_affiliation_strings":["Department of BioSciences, Rice University, Houston, TX, 77005, USA","Department of Computer Science, Rice University, Houston, TX, 77005, USA","Rice University"],"raw_orcid":"https://orcid.org/0000-0003-3288-6769","affiliations":[{"raw_affiliation_string":"Department of BioSciences, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Rice University","institution_ids":["https://openalex.org/I74775410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5080534085"],"corresponding_institution_ids":["https://openalex.org/I74775410"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":268.75,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.9972067,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"121","last_page":"138"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coalescent-theory","display_name":"Coalescent theory","score":0.9416457414627075},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7337578535079956},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.6024734973907471},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.5576450824737549},{"id":"https://openalex.org/keywords/maximum-likelihood","display_name":"Maximum likelihood","score":0.530135989189148},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.5276778340339661},{"id":"https://openalex.org/keywords/empirical-likelihood","display_name":"Empirical likelihood","score":0.44075626134872437},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.4115905165672302},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.39052146673202515},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37702223658561707},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3510724902153015},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30556273460388184},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.14292895793914795}],"concepts":[{"id":"https://openalex.org/C2554327","wikidata":"https://www.wikidata.org/wiki/Q2698599","display_name":"Coalescent theory","level":4,"score":0.9416457414627075},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7337578535079956},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.6024734973907471},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.5576450824737549},{"id":"https://openalex.org/C49781872","wikidata":"https://www.wikidata.org/wiki/Q1045555","display_name":"Maximum likelihood","level":2,"score":0.530135989189148},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.5276778340339661},{"id":"https://openalex.org/C2781117939","wikidata":"https://www.wikidata.org/wiki/Q5374245","display_name":"Empirical likelihood","level":3,"score":0.44075626134872437},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.4115905165672302},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.39052146673202515},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37702223658561707},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3510724902153015},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30556273460388184},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.14292895793914795},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-032-26891-4_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-26891-4_7","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"doi:10.1101/2025.01.28.635282","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2025.01.28.635282","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.1101/2025.01.28.635282","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2025.01.28.635282","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1136597839","https://openalex.org/W1525734744","https://openalex.org/W1843274134","https://openalex.org/W1892960895","https://openalex.org/W1897064680","https://openalex.org/W1916919897","https://openalex.org/W2057197272","https://openalex.org/W2060425093","https://openalex.org/W2062962705","https://openalex.org/W2071187610","https://openalex.org/W2099459260","https://openalex.org/W2111647009","https://openalex.org/W2114227052","https://openalex.org/W2116150018","https://openalex.org/W2117665706","https://openalex.org/W2125359798","https://openalex.org/W2132192579","https://openalex.org/W2134599124","https://openalex.org/W2134636579","https://openalex.org/W2139050004","https://openalex.org/W2145562754","https://openalex.org/W2145608399","https://openalex.org/W2148698435","https://openalex.org/W2159579403","https://openalex.org/W2165429502","https://openalex.org/W2227872181","https://openalex.org/W2345610960","https://openalex.org/W2587686537","https://openalex.org/W2612481336","https://openalex.org/W2614081736","https://openalex.org/W2950175395","https://openalex.org/W2950847777","https://openalex.org/W2952113249","https://openalex.org/W2955280494","https://openalex.org/W2962725223","https://openalex.org/W3003884646","https://openalex.org/W3008323581","https://openalex.org/W3101584830","https://openalex.org/W3196100932","https://openalex.org/W4382355798","https://openalex.org/W4384464513","https://openalex.org/W4391145682","https://openalex.org/W4398796180"],"related_works":["https://openalex.org/W3125148881","https://openalex.org/W2065648458","https://openalex.org/W2118272055","https://openalex.org/W2407375987","https://openalex.org/W3049691116","https://openalex.org/W2505726097","https://openalex.org/W2950975704","https://openalex.org/W2010643158","https://openalex.org/W2106867672","https://openalex.org/W4310268968"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
