{"id":"https://openalex.org/W7154469014","doi":"https://doi.org/10.1007/978-3-032-23241-0_11","title":"Auto_WGCNA: A Reproducible R Pipeline from Gene Counts to Hub Gene Identification","display_name":"Auto_WGCNA: A Reproducible R Pipeline from Gene Counts to Hub Gene Identification","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W7154469014","doi":"https://doi.org/10.1007/978-3-032-23241-0_11"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-032-23241-0_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-23241-0_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049322503","display_name":"Federico Giannelli","orcid":null},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Federico Giannelli","raw_affiliation_strings":["Department of Computer Science, Sapienza University of Rome, Viale Regina Elena 295, Rome, 00166, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Sapienza University of Rome, Viale Regina Elena 295, Rome, 00166, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092500891","display_name":"Manuel Arcieri","orcid":"https://orcid.org/0000-0002-2312-7704"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Manuel Arcieri","raw_affiliation_strings":["Department of Computer Science, Sapienza University of Rome, Viale Regina Elena 295, Rome, 00166, Italy"],"raw_orcid":"https://orcid.org/0000-0002-2312-7704","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Sapienza University of Rome, Viale Regina Elena 295, Rome, 00166, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120390730","display_name":"Meryam Carrus","orcid":null},"institutions":[{"id":"https://openalex.org/I138938424","display_name":"Universit\u00e0 degli Studi della Tuscia","ror":"https://ror.org/03svwq685","country_code":"IT","type":"education","lineage":["https://openalex.org/I138938424"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Meryam Carrus","raw_affiliation_strings":["Department of Ecological and Biological Sciences, University of Tuscia, Viale dell\u2019Universit\u00e0 s.n.c, Viterbo, 01100, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecological and Biological Sciences, University of Tuscia, Viale dell\u2019Universit\u00e0 s.n.c, Viterbo, 01100, Italy","institution_ids":["https://openalex.org/I138938424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021012062","display_name":"P Bottoni","orcid":null},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paolo Bottoni","raw_affiliation_strings":["Department of Computer Science, Sapienza University of Rome, Viale Regina Elena 295, Rome, 00166, Italy"],"raw_orcid":"https://orcid.org/0000-0003-4662-2019","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Sapienza University of Rome, Viale Regina Elena 295, Rome, 00166, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086235625","display_name":"Tiziana Castrignan\u00f2","orcid":"https://orcid.org/0000-0002-0689-6720"},"institutions":[{"id":"https://openalex.org/I138938424","display_name":"Universit\u00e0 degli Studi della Tuscia","ror":"https://ror.org/03svwq685","country_code":"IT","type":"education","lineage":["https://openalex.org/I138938424"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tiziana Castrignan\u00f2","raw_affiliation_strings":["Department of Ecological and Biological Sciences, University of Tuscia, Viale dell\u2019Universit\u00e0 s.n.c, Viterbo, 01100, Italy"],"raw_orcid":"https://orcid.org/0000-0002-0689-6720","affiliations":[{"raw_affiliation_string":"Department of Ecological and Biological Sciences, University of Tuscia, Viale dell\u2019Universit\u00e0 s.n.c, Viterbo, 01100, Italy","institution_ids":["https://openalex.org/I138938424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5021012062"],"corresponding_institution_ids":["https://openalex.org/I861853513"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.77752028,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"196","last_page":"209"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7452999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7452999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.09200000017881393,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.06509999930858612,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7764999866485596},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.567799985408783},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5575000047683716},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.5485000014305115},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.42480000853538513},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4034999907016754},{"id":"https://openalex.org/keywords/gene-co-expression-network","display_name":"Gene co-expression network","score":0.39579999446868896},{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.3659000098705292}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7879999876022339},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7764999866485596},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.567799985408783},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5575000047683716},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.5485000014305115},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45019999146461487},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.42480000853538513},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42010000348091125},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4034999907016754},{"id":"https://openalex.org/C2778022302","wikidata":"https://www.wikidata.org/wiki/Q18207329","display_name":"Gene co-expression network","level":5,"score":0.39579999446868896},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.3659000098705292},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.36489999294281006},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.3499000072479248},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.3352999985218048},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.29249998927116394},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.2865000069141388},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.28519999980926514},{"id":"https://openalex.org/C2776207758","wikidata":"https://www.wikidata.org/wiki/Q5303302","display_name":"Downstream (manufacturing)","level":2,"score":0.28049999475479126},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.2554999887943268}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-032-23241-0_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-23241-0_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:iris.uniroma1.it:11573/1765606","is_oa":false,"landing_page_url":"https://hdl.handle.net/11573/1765606","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1966327575","https://openalex.org/W2047537480","https://openalex.org/W2060705109","https://openalex.org/W2066231767","https://openalex.org/W2148742201","https://openalex.org/W2153498291","https://openalex.org/W2232722500","https://openalex.org/W2886175913","https://openalex.org/W2895989892","https://openalex.org/W3044920485","https://openalex.org/W3163227540","https://openalex.org/W3217763658","https://openalex.org/W4294329053","https://openalex.org/W4360826369","https://openalex.org/W4378574589","https://openalex.org/W4395468195","https://openalex.org/W4409088963","https://openalex.org/W4409888795","https://openalex.org/W4414189116","https://openalex.org/W4414657298","https://openalex.org/W4415501098","https://openalex.org/W4416334275"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2026-04-16T00:00:00"}
