{"id":"https://openalex.org/W4416309693","doi":"https://doi.org/10.1007/978-3-032-08455-2_3","title":"Integrated In Silico Pipeline for\u00a0Validating AI-Generated Ligands: From Docking Consensus to\u00a0Molecular Dynamics","display_name":"Integrated In Silico Pipeline for\u00a0Validating AI-Generated Ligands: From Docking Consensus to\u00a0Molecular Dynamics","publication_year":2025,"publication_date":"2025-11-18","ids":{"openalex":"https://openalex.org/W4416309693","doi":"https://doi.org/10.1007/978-3-032-08455-2_3"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-032-08455-2_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-08455-2_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064251517","display_name":"Maryam Abbasi","orcid":"https://orcid.org/0000-0002-9011-0734"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]},{"id":"https://openalex.org/I293362453","display_name":"Polytechnic Institute of Coimbra","ror":"https://ror.org/01n8x4993","country_code":"PT","type":"education","lineage":["https://openalex.org/I293362453"]},{"id":"https://openalex.org/I4210150309","display_name":"Research Center for Natural Resources, Environment and Society","ror":"https://ror.org/03n7krn06","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210150309"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Maryam Abbasi","raw_affiliation_strings":["Polytechnic University of Coimbra, Coimbra, Portugal","Research Centre for Natural Resources Environment and Society (CERNAS), Polytechnic University of Coimbra, Coimbra, Portugal"],"affiliations":[{"raw_affiliation_string":"Polytechnic University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I293362453","https://openalex.org/I76903346"]},{"raw_affiliation_string":"Research Centre for Natural Resources Environment and Society (CERNAS), Polytechnic University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I4210150309","https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069470015","display_name":"Paulo V\u00e1z","orcid":"https://orcid.org/0000-0002-1745-8937"},"institutions":[{"id":"https://openalex.org/I56125125","display_name":"Polytechnic Institute of Viseu","ror":"https://ror.org/0235kxk33","country_code":"PT","type":"education","lineage":["https://openalex.org/I56125125"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Paulo V\u00e1z","raw_affiliation_strings":["CISeD - Digital Services Research Center, Polytechnic of Viseu, Viseu, Portugal"],"affiliations":[{"raw_affiliation_string":"CISeD - Digital Services Research Center, Polytechnic of Viseu, Viseu, Portugal","institution_ids":["https://openalex.org/I56125125"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033076292","display_name":"Jos\u00e9 Silva","orcid":"https://orcid.org/0000-0002-8128-9234"},"institutions":[{"id":"https://openalex.org/I56125125","display_name":"Polytechnic Institute of Viseu","ror":"https://ror.org/0235kxk33","country_code":"PT","type":"education","lineage":["https://openalex.org/I56125125"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Silva","raw_affiliation_strings":["CISeD - Digital Services Research Center, Polytechnic of Viseu, Viseu, Portugal"],"affiliations":[{"raw_affiliation_string":"CISeD - Digital Services Research Center, Polytechnic of Viseu, Viseu, Portugal","institution_ids":["https://openalex.org/I56125125"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024233672","display_name":"Pedro Martins","orcid":"https://orcid.org/0000-0002-3630-7034"},"institutions":[{"id":"https://openalex.org/I56125125","display_name":"Polytechnic Institute of Viseu","ror":"https://ror.org/0235kxk33","country_code":"PT","type":"education","lineage":["https://openalex.org/I56125125"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Pedro Martins","raw_affiliation_strings":["CISeD - Digital Services Research Center, Polytechnic of Viseu, Viseu, Portugal"],"affiliations":[{"raw_affiliation_string":"CISeD - Digital Services Research Center, Polytechnic of Viseu, Viseu, Portugal","institution_ids":["https://openalex.org/I56125125"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5064251517"],"corresponding_institution_ids":["https://openalex.org/I293362453","https://openalex.org/I4210150309","https://openalex.org/I76903346"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.7478131,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"34","last_page":"44"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8331000208854675,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8331000208854675,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.026900000870227814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.013299999758601189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.8896999955177307},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.5199000239372253},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.49779999256134033},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.477400004863739},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4472000002861023},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4440999925136566},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4072999954223633}],"concepts":[{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.8896999955177307},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8075000047683716},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.5199000239372253},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5012000203132629},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.49779999256134033},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.47769999504089355},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.477400004863739},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4472000002861023},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4440999925136566},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4072999954223633},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.3837999999523163},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.34549999237060547},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.31709998846054077},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31520000100135803},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2953000068664551},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2881999909877777},{"id":"https://openalex.org/C4438859","wikidata":"https://www.wikidata.org/wiki/Q186117","display_name":"Timeline","level":2,"score":0.2567000091075897},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2567000091075897}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-032-08455-2_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-08455-2_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1985588649","https://openalex.org/W1989497142","https://openalex.org/W2018841730","https://openalex.org/W2130479394","https://openalex.org/W2271736303","https://openalex.org/W2344408149","https://openalex.org/W2467820898","https://openalex.org/W2896002881","https://openalex.org/W2918239264","https://openalex.org/W2925328267","https://openalex.org/W2985816842","https://openalex.org/W3009999522","https://openalex.org/W3013382443","https://openalex.org/W3112587790","https://openalex.org/W3163201806","https://openalex.org/W3212543990"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-28T10:56:14.304087","created_date":"2025-11-18T00:00:00"}
