{"id":"https://openalex.org/W4415077518","doi":"https://doi.org/10.1007/978-3-032-07502-4_13","title":"From Reports to Relations: Large Language Models for Knowledge Graph Extraction in Digital Pathology","display_name":"From Reports to Relations: Large Language Models for Knowledge Graph Extraction in Digital Pathology","publication_year":2025,"publication_date":"2025-10-11","ids":{"openalex":"https://openalex.org/W4415077518","doi":"https://doi.org/10.1007/978-3-032-07502-4_13"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-032-07502-4_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-07502-4_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062591725","display_name":"Karthik Prathaban","orcid":"https://orcid.org/0000-0002-7308-540X"},"institutions":[{"id":"https://openalex.org/I4210149908","display_name":"Erasmus MC Cancer Institute","ror":"https://ror.org/03r4m3349","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686","https://openalex.org/I4210149908"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Karthik Prathaban","raw_affiliation_strings":["Department of Pathology, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands","Department of Radiology and Nuclear Medicine, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-7308-540X","affiliations":[{"raw_affiliation_string":"Department of Pathology, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I4210149908"]},{"raw_affiliation_string":"Department of Radiology and Nuclear Medicine, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I4210149908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040413720","display_name":"Farhan Akram","orcid":"https://orcid.org/0000-0003-4109-2645"},"institutions":[{"id":"https://openalex.org/I4210149908","display_name":"Erasmus MC Cancer Institute","ror":"https://ror.org/03r4m3349","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686","https://openalex.org/I4210149908"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Farhan Akram","raw_affiliation_strings":["Department of Pathology, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-4109-2645","affiliations":[{"raw_affiliation_string":"Department of Pathology, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I4210149908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052901925","display_name":"Stefan Klein","orcid":"https://orcid.org/0000-0003-4449-6784"},"institutions":[{"id":"https://openalex.org/I4210149908","display_name":"Erasmus MC Cancer Institute","ror":"https://ror.org/03r4m3349","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686","https://openalex.org/I4210149908"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Stefan Klein","raw_affiliation_strings":["Department of Radiology and Nuclear Medicine, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-4449-6784","affiliations":[{"raw_affiliation_string":"Department of Radiology and Nuclear Medicine, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I4210149908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087184723","display_name":"Martijn P. A. Starmans","orcid":"https://orcid.org/0000-0001-5086-7153"},"institutions":[{"id":"https://openalex.org/I4210149908","display_name":"Erasmus MC Cancer Institute","ror":"https://ror.org/03r4m3349","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686","https://openalex.org/I4210149908"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Martijn P. A. Starmans","raw_affiliation_strings":["Department of Pathology, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands","Department of Radiology and Nuclear Medicine, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-5086-7153","affiliations":[{"raw_affiliation_string":"Department of Pathology, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I4210149908"]},{"raw_affiliation_string":"Department of Radiology and Nuclear Medicine, Erasmus MC Cancer Institute, University Medical Center Rotterdam., Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I4210149908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5062591725"],"corresponding_institution_ids":["https://openalex.org/I4210149908"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.2327373,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"107","last_page":"114"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.6923999786376953},{"id":"https://openalex.org/keywords/structuring","display_name":"Structuring","score":0.5221999883651733},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4708000123500824},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.46299999952316284},{"id":"https://openalex.org/keywords/downstream","display_name":"Downstream (manufacturing)","score":0.4530999958515167},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.43869999051094055},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.4293999969959259},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.3749000132083893},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.366100013256073}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.9114000201225281},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.6923999786376953},{"id":"https://openalex.org/C2775945657","wikidata":"https://www.wikidata.org/wiki/Q381442","display_name":"Structuring","level":2,"score":0.5221999883651733},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.499099999666214},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4708000123500824},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.46299999952316284},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46149998903274536},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4602000117301941},{"id":"https://openalex.org/C2776207758","wikidata":"https://www.wikidata.org/wiki/Q5303302","display_name":"Downstream (manufacturing)","level":2,"score":0.4530999958515167},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.43869999051094055},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.4293999969959259},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.3749000132083893},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.366100013256073},{"id":"https://openalex.org/C234837","wikidata":"https://www.wikidata.org/wiki/Q1420493","display_name":"Conceptual graph","level":3,"score":0.3596999943256378},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.322299987077713},{"id":"https://openalex.org/C85407183","wikidata":"https://www.wikidata.org/wiki/Q1045785","display_name":"Semantic network","level":2,"score":0.3158999979496002},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.3100999891757965},{"id":"https://openalex.org/C2778701210","wikidata":"https://www.wikidata.org/wiki/Q28130034","display_name":"Constructive","level":3,"score":0.2969000041484833},{"id":"https://openalex.org/C2779810430","wikidata":"https://www.wikidata.org/wiki/Q1929761","display_name":"Knowledge organization","level":2,"score":0.296099990606308},{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.2939000129699707},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.2897999882698059},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.2809000015258789},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.2736999988555908},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.2703999876976013},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.2671999931335449},{"id":"https://openalex.org/C190812933","wikidata":"https://www.wikidata.org/wiki/Q28923","display_name":"Chart","level":2,"score":0.2597000002861023},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.25360000133514404}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-032-07502-4_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-07502-4_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:pure.eur.nl:openaire_cris_publications/5944aab3-fd79-4a09-8129-6e1f44f426b5","is_oa":false,"landing_page_url":"https://pure.eur.nl/en/publications/5944aab3-fd79-4a09-8129-6e1f44f426b5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2949311246","https://openalex.org/W2979826702","https://openalex.org/W4318983406","https://openalex.org/W4362522726","https://openalex.org/W4402167740","https://openalex.org/W4402713323","https://openalex.org/W4407709616","https://openalex.org/W4411507112"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-12T00:00:00"}
