{"id":"https://openalex.org/W4414723952","doi":"https://doi.org/10.1007/978-3-032-02725-2_8","title":"A Transformer-Based Model to\u00a0Predict Micro RNA Interactions","display_name":"A Transformer-Based Model to\u00a0Predict Micro RNA Interactions","publication_year":2025,"publication_date":"2025-10-01","ids":{"openalex":"https://openalex.org/W4414723952","doi":"https://doi.org/10.1007/978-3-032-02725-2_8"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-032-02725-2_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-02725-2_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050010139","display_name":"Marco Nicolini","orcid":"https://orcid.org/0009-0008-5137-2361"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Marco Nicolini","raw_affiliation_strings":["AnacletoLab - Dipartimento Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"AnacletoLab - Dipartimento Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107736161","display_name":"Federico Stacchietti","orcid":null},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Federico Stacchietti","raw_affiliation_strings":["AnacletoLab - Dipartimento Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"AnacletoLab - Dipartimento Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006253386","display_name":"Carlos Cano","orcid":"https://orcid.org/0000-0002-0181-2444"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Cano","raw_affiliation_strings":["Ciencias de la Computacion e Inteligencia Artificial, Universidad de Granada, Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Ciencias de la Computacion e Inteligencia Artificial, Universidad de Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079939753","display_name":"Elena Casiraghi","orcid":"https://orcid.org/0000-0003-2024-7572"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210121560","display_name":"European School of Oncology","ror":"https://ror.org/02kvnjb40","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210121560"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","IT","US"],"is_corresponding":false,"raw_author_name":"Elena Casiraghi","raw_affiliation_strings":["AnacletoLab - Dipartimento Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","Department of Computer Science, Aalto University, Espoo, Finland","ELLIS - European Lab for Learning and Intelligent Systems, Milan Unit, Milan, Italy","Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"AnacletoLab - Dipartimento Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Department of Computer Science, Aalto University, Espoo, Finland","institution_ids":["https://openalex.org/I9927081"]},{"raw_affiliation_string":"ELLIS - European Lab for Learning and Intelligent Systems, Milan Unit, Milan, Italy","institution_ids":["https://openalex.org/I4210121560"]},{"raw_affiliation_string":"Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071444502","display_name":"Giorgio Valentini","orcid":"https://orcid.org/0000-0002-5694-3919"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210121560","display_name":"European School of Oncology","ror":"https://ror.org/02kvnjb40","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210121560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giorgio Valentini","raw_affiliation_strings":["AnacletoLab - Dipartimento Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","ELLIS - European Lab for Learning and Intelligent Systems, Milan Unit, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"AnacletoLab - Dipartimento Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"ELLIS - European Lab for Learning and Intelligent Systems, Milan Unit, Milan, Italy","institution_ids":["https://openalex.org/I4210121560"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5050010139"],"corresponding_institution_ids":["https://openalex.org/I189158943"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":6.2122,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.96374096,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"97","last_page":"109"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.6388999819755554},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6370000243186951},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5924000144004822},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.4672999978065491},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.45509999990463257}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7523999810218811},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.6388999819755554},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6370000243186951},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5924000144004822},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4683000147342682},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.4672999978065491},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4652000069618225},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.45509999990463257},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.36399999260902405},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.36320000886917114},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3188000023365021},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.26829999685287476},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2662999927997589},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2651999890804291},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.26159998774528503}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-032-02725-2_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-02725-2_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W2053855164","https://openalex.org/W2109553965","https://openalex.org/W2514258009","https://openalex.org/W2565865891","https://openalex.org/W2610733803","https://openalex.org/W2972256305","https://openalex.org/W3095979265","https://openalex.org/W3171835979","https://openalex.org/W3200563416","https://openalex.org/W3210024567","https://openalex.org/W4220685469","https://openalex.org/W4290546063","https://openalex.org/W4388945356","https://openalex.org/W4396721167","https://openalex.org/W4401814202","https://openalex.org/W4403023684","https://openalex.org/W4404595545","https://openalex.org/W4406024492","https://openalex.org/W4408920870","https://openalex.org/W4410316249"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
