{"id":"https://openalex.org/W4412044703","doi":"https://doi.org/10.1007/978-3-031-97635-3_31","title":"Accelerating Cloud-Based Transcriptomics: Performance Analysis and\u00a0Optimization of\u00a0the\u00a0STAR Aligner Workflow","display_name":"Accelerating Cloud-Based Transcriptomics: Performance Analysis and\u00a0Optimization of\u00a0the\u00a0STAR Aligner Workflow","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4412044703","doi":"https://doi.org/10.1007/978-3-031-97635-3_31"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-97635-3_31","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-97635-3_31","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032367415","display_name":"Piotr Kica","orcid":"https://orcid.org/0009-0001-9269-6804"},"institutions":[{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Piotr Kica","raw_affiliation_strings":["Faculty of Computer Science, AGH University of Krak\u00f3w, Krak\u00f3w, Poland","Sano Centre for Computational Medicine, Krak\u00f3w, Poland"],"raw_orcid":"https://orcid.org/0009-0001-9269-6804","affiliations":[{"raw_affiliation_string":"Faculty of Computer Science, AGH University of Krak\u00f3w, Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019"]},{"raw_affiliation_string":"Sano Centre for Computational Medicine, Krak\u00f3w, Poland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053746593","display_name":"Sabina Licho\u0142ai","orcid":"https://orcid.org/0000-0001-7008-2492"},"institutions":[{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Sabina Licho\u0142ai","raw_affiliation_strings":["Academic Computer Centre Cyfronet AGH, Krak\u00f3w, Poland","Sano Centre for Computational Medicine, Krak\u00f3w, Poland"],"raw_orcid":"https://orcid.org/0000-0001-7008-2492","affiliations":[{"raw_affiliation_string":"Academic Computer Centre Cyfronet AGH, Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019"]},{"raw_affiliation_string":"Sano Centre for Computational Medicine, Krak\u00f3w, Poland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039584998","display_name":"Micha\u0142 Orzechowski","orcid":"https://orcid.org/0000-0002-8558-1283"},"institutions":[{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Micha\u0142 Orzechowski","raw_affiliation_strings":["Academic Computer Centre Cyfronet AGH, Krak\u00f3w, Poland","Faculty of Computer Science, AGH University of Krak\u00f3w, Krak\u00f3w, Poland","Sano Centre for Computational Medicine, Krak\u00f3w, Poland"],"raw_orcid":"https://orcid.org/0000-0002-8558-1283","affiliations":[{"raw_affiliation_string":"Academic Computer Centre Cyfronet AGH, Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019"]},{"raw_affiliation_string":"Faculty of Computer Science, AGH University of Krak\u00f3w, Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019"]},{"raw_affiliation_string":"Sano Centre for Computational Medicine, Krak\u00f3w, Poland","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107194750","display_name":"M. Malawski","orcid":"https://orcid.org/0000-0001-6005-0243"},"institutions":[{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Maciej Malawski","raw_affiliation_strings":["Faculty of Computer Science, AGH University of Krak\u00f3w, Krak\u00f3w, Poland","Sano Centre for Computational Medicine, Krak\u00f3w, Poland"],"raw_orcid":"https://orcid.org/0000-0001-6005-0243","affiliations":[{"raw_affiliation_string":"Faculty of Computer Science, AGH University of Krak\u00f3w, Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019"]},{"raw_affiliation_string":"Sano Centre for Computational Medicine, Krak\u00f3w, Poland","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5032367415"],"corresponding_institution_ids":["https://openalex.org/I686019"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":13.3647,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.98867244,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"257","last_page":"265"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8771134614944458},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7675439119338989},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7630108594894409},{"id":"https://openalex.org/keywords/star","display_name":"Star (game theory)","score":0.5070617198944092},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4280146360397339},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2805488109588623},{"id":"https://openalex.org/keywords/astrophysics","display_name":"Astrophysics","score":0.08575901389122009}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8771134614944458},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7675439119338989},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7630108594894409},{"id":"https://openalex.org/C2780897414","wikidata":"https://www.wikidata.org/wiki/Q7600592","display_name":"Star (game theory)","level":2,"score":0.5070617198944092},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4280146360397339},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2805488109588623},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.08575901389122009},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-97635-3_31","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-97635-3_31","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2169456326","https://openalex.org/W2740811199","https://openalex.org/W3009680524","https://openalex.org/W3047877511","https://openalex.org/W3146294934","https://openalex.org/W3193844559","https://openalex.org/W3216633781","https://openalex.org/W4307843054","https://openalex.org/W4311404396","https://openalex.org/W4360979106","https://openalex.org/W4376614239","https://openalex.org/W4388561700","https://openalex.org/W4388967998","https://openalex.org/W4404099960"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4244478748","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W3150465815","https://openalex.org/W4223488648","https://openalex.org/W45233828","https://openalex.org/W2964988449"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
