{"id":"https://openalex.org/W4413874210","doi":"https://doi.org/10.1007/978-3-031-94928-9_6","title":"tMHG-Finder: Tree-Guided Maximal Homologous Group Finder for\u00a0Bacterial Genomes","display_name":"tMHG-Finder: Tree-Guided Maximal Homologous Group Finder for\u00a0Bacterial Genomes","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4413874210","doi":"https://doi.org/10.1007/978-3-031-94928-9_6"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-94928-9_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-94928-9_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065335417","display_name":"Yongze Yin","orcid":"https://orcid.org/0000-0001-7921-0796"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yongze Yin","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, TX, 77005, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072499401","display_name":"Bryce Kille","orcid":"https://orcid.org/0000-0003-2946-6915"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryce Kille","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, TX, 77005, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010915538","display_name":"Huw A. Ogilvie","orcid":"https://orcid.org/0000-0003-1589-6885"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huw A. Ogilvie","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, TX, 77005, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054369332","display_name":"Todd J. Treangen","orcid":"https://orcid.org/0000-0002-3760-564X"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]},{"id":"https://openalex.org/I4210094934","display_name":"Kennedy Center","ror":"https://ror.org/00kzzgw26","country_code":"DK","type":"healthcare","lineage":["https://openalex.org/I2802567020","https://openalex.org/I4210094934"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Todd J. Treangen","raw_affiliation_strings":["Department of Bioengineering, Rice University, Houston, TX, 77005, USA","Department of Computer Science, Rice University, Houston, TX, 77005, USA","Ken Kennedy Institute, Rice University, Houston, TX, 77005, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Ken Kennedy Institute, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410","https://openalex.org/I4210094934"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080534085","display_name":"Luay Nakhleh","orcid":"https://orcid.org/0000-0003-3288-6769"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luay Nakhleh","raw_affiliation_strings":["Department of BioSciences, Rice University, Houston, TX, 77005, USA","Department of Computer Science, Rice University, Houston, TX, 77005, USA"],"affiliations":[{"raw_affiliation_string":"Department of BioSciences, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX, 77005, USA","institution_ids":["https://openalex.org/I74775410"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5065335417"],"corresponding_institution_ids":["https://openalex.org/I74775410"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.4300953,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"87","last_page":"104"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9722999930381775,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9692999720573425,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7025647163391113},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6482715606689453},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5101028084754944},{"id":"https://openalex.org/keywords/homologous-chromosome","display_name":"Homologous chromosome","score":0.5084094405174255},{"id":"https://openalex.org/keywords/group","display_name":"Group (periodic table)","score":0.4576825201511383},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3562003970146179},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.22799012064933777},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15306910872459412},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15048211812973022},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1428697109222412},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09000992774963379},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08151388168334961}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7025647163391113},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6482715606689453},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5101028084754944},{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.5084094405174255},{"id":"https://openalex.org/C2781311116","wikidata":"https://www.wikidata.org/wiki/Q83306","display_name":"Group (periodic table)","level":2,"score":0.4576825201511383},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3562003970146179},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.22799012064933777},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15306910872459412},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15048211812973022},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1428697109222412},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09000992774963379},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08151388168334961},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-94928-9_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-94928-9_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1776424232","https://openalex.org/W1976841360","https://openalex.org/W1990321397","https://openalex.org/W1998377233","https://openalex.org/W2016681664","https://openalex.org/W2022927779","https://openalex.org/W2041257508","https://openalex.org/W2054385769","https://openalex.org/W2055043387","https://openalex.org/W2100874222","https://openalex.org/W2100945839","https://openalex.org/W2112364185","https://openalex.org/W2122673596","https://openalex.org/W2141274012","https://openalex.org/W2160378127","https://openalex.org/W2164786886","https://openalex.org/W2168316093","https://openalex.org/W2178637309","https://openalex.org/W2579640851","https://openalex.org/W2950150251","https://openalex.org/W2951254987","https://openalex.org/W3045244624","https://openalex.org/W3084456795","https://openalex.org/W3100651612","https://openalex.org/W3111607156","https://openalex.org/W3122627817","https://openalex.org/W3200103613","https://openalex.org/W3200607899","https://openalex.org/W4221104280","https://openalex.org/W4282914841","https://openalex.org/W4292622959","https://openalex.org/W4293680421","https://openalex.org/W4387934158","https://openalex.org/W4396814104"],"related_works":["https://openalex.org/W2130345139","https://openalex.org/W1988893860","https://openalex.org/W2086525401","https://openalex.org/W2072212852","https://openalex.org/W4389179866","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W2888097224"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
