{"id":"https://openalex.org/W4411310527","doi":"https://doi.org/10.1007/978-3-031-94571-7_17","title":"Restructuring Knowledge Graphs with\u00a0Conceptual Models: Implications for\u00a0Machine Learning Predictions in\u00a0Drug Repurposing","display_name":"Restructuring Knowledge Graphs with\u00a0Conceptual Models: Implications for\u00a0Machine Learning Predictions in\u00a0Drug Repurposing","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4411310527","doi":"https://doi.org/10.1007/978-3-031-94571-7_17"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-94571-7_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-94571-7_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pure.amsterdamumc.nl/en/publications/c818e9d2-5563-42d9-8869-ff8f61c88374","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083059200","display_name":"C\u00e9sar H. Bernab\u00e9","orcid":"https://orcid.org/0000-0003-1795-5930"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"C\u00e9sar Bernab\u00e9","raw_affiliation_strings":["Leiden University Medical Center, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045353953","display_name":"R.A. van der Zwart","orcid":null},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Rosa Zwart","raw_affiliation_strings":["Leiden University Medical Center, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5096912084","display_name":"Pablo Perdomo-Quinteiro","orcid":"https://orcid.org/0000-0001-8784-0907"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pablo Perdomo-Quinteiro","raw_affiliation_strings":["Grupo de Aplicaci\u00f3n de Telecomunicaciones Visuales, Escuela T\u00e9cnica Superior de Ingenieros de Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grupo de Aplicaci\u00f3n de Telecomunicaciones Visuales, Escuela T\u00e9cnica Superior de Ingenieros de Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054615637","display_name":"Annika Jacobsen","orcid":"https://orcid.org/0000-0003-4818-2360"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Annika Jacobsen","raw_affiliation_strings":["Leiden University Medical Center, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030998387","display_name":"Tiago Prince Sales","orcid":"https://orcid.org/0000-0002-5385-5761"},"institutions":[{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Tiago Prince Sales","raw_affiliation_strings":["Semantics, Services and Cybersecurity group, University of Twente, Enschede, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Semantics, Services and Cybersecurity group, University of Twente, Enschede, The Netherlands","institution_ids":["https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080481806","display_name":"N\u00faria Queralt-Rosi\u00f1ach","orcid":"https://orcid.org/0000-0003-0169-8159"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"N\u00faria Queralt-Rosinach","raw_affiliation_strings":["Leiden University Medical Center, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087859284","display_name":"Katherine Wolstencroft","orcid":"https://orcid.org/0000-0002-1279-5133"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Katherine Wolstencroft","raw_affiliation_strings":["Advanced Compute and Data Core, Amsterdam University Medical Centre, Amsterdam, The Netherlands","Life Science Semantics Group, Leiden Institute of Advanced Computer Science, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Compute and Data Core, Amsterdam University Medical Centre, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Life Science Semantics Group, Leiden Institute of Advanced Computer Science, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067310105","display_name":"Luiz Olavo Bonino da Silva Santos","orcid":"https://orcid.org/0000-0002-1164-1351"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Luiz Olavo Bonino da Silva Santos","raw_affiliation_strings":["Leiden University Medical Center, Leiden, The Netherlands","Semantics, Services and Cybersecurity group, University of Twente, Enschede, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]},{"raw_affiliation_string":"Semantics, Services and Cybersecurity group, University of Twente, Enschede, The Netherlands","institution_ids":["https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070745825","display_name":"Barend Mons","orcid":null},"institutions":[{"id":"https://openalex.org/I210716285","display_name":"University of Applied Sciences Leiden","ror":"https://ror.org/0093src13","country_code":"NL","type":"education","lineage":["https://openalex.org/I210716285"]},{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Barend Mons","raw_affiliation_strings":["GO FAIR Office, Leiden, The Netherlands","Leiden University Medical Center, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GO FAIR Office, Leiden, The Netherlands","institution_ids":["https://openalex.org/I210716285"]},{"raw_affiliation_string":"Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021179422","display_name":"Marco Roos","orcid":"https://orcid.org/0000-0002-8691-772X"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marco Roos","raw_affiliation_strings":["Leiden University Medical Center, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5083059200"],"corresponding_institution_ids":["https://openalex.org/I2800006345"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"297","last_page":"313"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9629999995231628,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8327029943466187},{"id":"https://openalex.org/keywords/restructuring","display_name":"Restructuring","score":0.7427454590797424},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6128897666931152},{"id":"https://openalex.org/keywords/conceptual-graph","display_name":"Conceptual graph","score":0.5248368382453918},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.513391375541687},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.46158555150032043},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4378284215927124},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.34071072936058044},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.17788463830947876}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8327029943466187},{"id":"https://openalex.org/C45237549","wikidata":"https://www.wikidata.org/wiki/Q1376796","display_name":"Restructuring","level":2,"score":0.7427454590797424},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6128897666931152},{"id":"https://openalex.org/C234837","wikidata":"https://www.wikidata.org/wiki/Q1420493","display_name":"Conceptual graph","level":3,"score":0.5248368382453918},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.513391375541687},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.46158555150032043},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4378284215927124},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.34071072936058044},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.17788463830947876},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-031-94571-7_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-94571-7_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire_cris_publications/c818e9d2-5563-42d9-8869-ff8f61c88374","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/c818e9d2-5563-42d9-8869-ff8f61c88374","pdf_url":null,"source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:ris.utwente.nl:openaire/424d174d-7865-4d3a-b0bd-19205a3bce44","is_oa":true,"landing_page_url":"https://research.utwente.nl/en/publications/424d174d-7865-4d3a-b0bd-19205a3bce44","pdf_url":null,"source":{"id":"https://openalex.org/S4406922991","display_name":"University of Twente Research Information","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/bookPart"}],"best_oa_location":{"id":"pmh:oai:pure.amsterdamumc.nl:openaire_cris_publications/c818e9d2-5563-42d9-8869-ff8f61c88374","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/c818e9d2-5563-42d9-8869-ff8f61c88374","pdf_url":null,"source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W2034537627","https://openalex.org/W2169735361","https://openalex.org/W2302501749","https://openalex.org/W2539985226","https://openalex.org/W2784934916","https://openalex.org/W2896002881","https://openalex.org/W2945750823","https://openalex.org/W2954442758","https://openalex.org/W2983093386","https://openalex.org/W2988998130","https://openalex.org/W3002568562","https://openalex.org/W3083542541","https://openalex.org/W3127311830","https://openalex.org/W3133281259","https://openalex.org/W3136501774","https://openalex.org/W3161906559","https://openalex.org/W3176589197","https://openalex.org/W4200230695","https://openalex.org/W4211062787","https://openalex.org/W4212919921","https://openalex.org/W4388041079","https://openalex.org/W4399449888","https://openalex.org/W4401812415","https://openalex.org/W4403503306","https://openalex.org/W4408423733","https://openalex.org/W6902204439"],"related_works":["https://openalex.org/W2376397586","https://openalex.org/W2377702023","https://openalex.org/W2376263261","https://openalex.org/W2339564564","https://openalex.org/W1506264906","https://openalex.org/W3127177933","https://openalex.org/W2376259828","https://openalex.org/W4293114323","https://openalex.org/W4312933959","https://openalex.org/W4226046389"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-19T07:52:34.831488","created_date":"2025-10-10T00:00:00"}
