{"id":"https://openalex.org/W4409739189","doi":"https://doi.org/10.1007/978-3-031-90252-9_3","title":"Sequence-Based TCR-Peptide Representations Using Cross-Epitope Contrastive Fine-Tuning of Protein Language Models","display_name":"Sequence-Based TCR-Peptide Representations Using Cross-Epitope Contrastive Fine-Tuning of Protein Language Models","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4409739189","doi":"https://doi.org/10.1007/978-3-031-90252-9_3"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-90252-9_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-90252-9_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114442883","display_name":"Chiho Im","orcid":"https://orcid.org/0000-0003-1909-3297"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chiho Im","raw_affiliation_strings":["Department of Computer Science, Stanford University, Stanford, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101575277","display_name":"Ryan Zhao","orcid":"https://orcid.org/0009-0009-0204-9370"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan Zhao","raw_affiliation_strings":["Department of Computer Science, Stanford University, Stanford, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064302758","display_name":"Scott D. Boyd","orcid":"https://orcid.org/0000-0003-0963-044X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott D. Boyd","raw_affiliation_strings":["Department of Pathology, Stanford University, Stanford, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Stanford University, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083952534","display_name":"Anshul Kundaje","orcid":"https://orcid.org/0000-0003-3084-2287"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anshul Kundaje","raw_affiliation_strings":["Department of Computer Science, Stanford University, Stanford, USA","Department of Genetics, Stanford University, Stanford, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5114442883"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":13.3388,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.98085162,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"34","last_page":"48"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7617507576942444},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.6127609610557556},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5966016054153442},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47540315985679626},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4723333418369293},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3374482989311218},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.11663591861724854},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11588573455810547},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08472266793251038},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.05710399150848389}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7617507576942444},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.6127609610557556},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5966016054153442},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47540315985679626},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4723333418369293},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3374482989311218},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.11663591861724854},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11588573455810547},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08472266793251038},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.05710399150848389},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-90252-9_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-90252-9_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1967195968","https://openalex.org/W2031011895","https://openalex.org/W2108147510","https://openalex.org/W2120518061","https://openalex.org/W2132983397","https://openalex.org/W2163660115","https://openalex.org/W2613978126","https://openalex.org/W2671261300","https://openalex.org/W2898389621","https://openalex.org/W2963341956","https://openalex.org/W2965921152","https://openalex.org/W3080758869","https://openalex.org/W3105082142","https://openalex.org/W3135367836","https://openalex.org/W3138156743","https://openalex.org/W3138783506","https://openalex.org/W3177500196","https://openalex.org/W3198942356","https://openalex.org/W3216334900","https://openalex.org/W4226199741","https://openalex.org/W4280625391","https://openalex.org/W4291624945","https://openalex.org/W4317532687","https://openalex.org/W4323320132","https://openalex.org/W4323974789","https://openalex.org/W4327550249","https://openalex.org/W4367295958","https://openalex.org/W4388020856","https://openalex.org/W4394786758","https://openalex.org/W4396707138","https://openalex.org/W4398184746","https://openalex.org/W4399375446","https://openalex.org/W4399849668","https://openalex.org/W4400231442","https://openalex.org/W4400503324","https://openalex.org/W4405909579","https://openalex.org/W6600424091","https://openalex.org/W6796581206"],"related_works":["https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W1978626146","https://openalex.org/W3204019825"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
