{"id":"https://openalex.org/W4409739446","doi":"https://doi.org/10.1007/978-3-031-90252-9_29","title":"Inferring Cell Differentiation Maps from\u00a0Lineage Tracing Data","display_name":"Inferring Cell Differentiation Maps from\u00a0Lineage Tracing Data","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4409739446","doi":"https://doi.org/10.1007/978-3-031-90252-9_29"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-90252-9_29","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-90252-9_29","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016072291","display_name":"Palash Sashittal","orcid":"https://orcid.org/0000-0001-6581-4839"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Palash Sashittal","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, 08544, USA"],"raw_orcid":"https://orcid.org/0000-0001-6581-4839","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101616527","display_name":"Richard Zhang","orcid":"https://orcid.org/0000-0001-7712-1247"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Y. Zhang","raw_affiliation_strings":["Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA"],"raw_orcid":"https://orcid.org/0000-0001-7712-1247","affiliations":[{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022561918","display_name":"Benjamin K. Law","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin K. Law","raw_affiliation_strings":["Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013775199","display_name":"Henri Schmidt","orcid":"https://orcid.org/0000-0002-0132-3472"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Henri Schmidt","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, 08544, USA"],"raw_orcid":"https://orcid.org/0000-0002-0132-3472","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054844013","display_name":"Alexander Strzalkowski","orcid":"https://orcid.org/0009-0004-0394-1081"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Strzalkowski","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, 08544, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082518114","display_name":"Adriano Bolondi","orcid":"https://orcid.org/0000-0002-1096-9435"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Adriano Bolondi","raw_affiliation_strings":["Department of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195, Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1096-9435","affiliations":[{"raw_affiliation_string":"Department of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053566696","display_name":"Michelle M. Chan","orcid":"https://orcid.org/0000-0001-9451-9716"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michelle M. Chan","raw_affiliation_strings":["Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA","Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA"],"raw_orcid":"https://orcid.org/0000-0001-9451-9716","affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025899028","display_name":"Benjamin J. Raphael","orcid":"https://orcid.org/0000-0003-1274-048X"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]},{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Benjamin J. Raphael","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, 08544, USA","Department of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195, Berlin, Germany","Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA","Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA"],"raw_orcid":"https://orcid.org/0000-0003-1274-048X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Department of Genome Regulation, Max Planck Institute for Molecular Genetics, 14195, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]},{"raw_affiliation_string":"Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5016072291"],"corresponding_institution_ids":["https://openalex.org/I20089843"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":16.5057,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.98922582,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"312","last_page":"315"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7948038578033447},{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.6812781691551208},{"id":"https://openalex.org/keywords/lineage","display_name":"Lineage (genetic)","score":0.5796809196472168},{"id":"https://openalex.org/keywords/cell-lineage","display_name":"Cell lineage","score":0.4114013612270355},{"id":"https://openalex.org/keywords/cellular-differentiation","display_name":"Cellular differentiation","score":0.16064462065696716},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14002519845962524},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11760494112968445},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06109580397605896}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7948038578033447},{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.6812781691551208},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.5796809196472168},{"id":"https://openalex.org/C2777620950","wikidata":"https://www.wikidata.org/wiki/Q189105","display_name":"Cell lineage","level":4,"score":0.4114013612270355},{"id":"https://openalex.org/C148738053","wikidata":"https://www.wikidata.org/wiki/Q210861","display_name":"Cellular differentiation","level":3,"score":0.16064462065696716},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14002519845962524},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11760494112968445},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06109580397605896},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-90252-9_29","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-90252-9_29","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1989952069","https://openalex.org/W2097749765","https://openalex.org/W2801527818","https://openalex.org/W2802302382","https://openalex.org/W2949490462","https://openalex.org/W3002219094","https://openalex.org/W3015748341","https://openalex.org/W4229016240","https://openalex.org/W4232322096","https://openalex.org/W4310074701","https://openalex.org/W4393932606"],"related_works":["https://openalex.org/W1584790000","https://openalex.org/W2051373661","https://openalex.org/W2066343735","https://openalex.org/W4241815234","https://openalex.org/W2091013032","https://openalex.org/W2610470949","https://openalex.org/W4388366256","https://openalex.org/W2255723888","https://openalex.org/W1987113372","https://openalex.org/W2239735225"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}