{"id":"https://openalex.org/W4409739430","doi":"https://doi.org/10.1007/978-3-031-90252-9_10","title":"Scalable and\u00a0Interpretable Identification of\u00a0Minimal Undesignable RNA Structure Motifs with\u00a0Rotational Invariance","display_name":"Scalable and\u00a0Interpretable Identification of\u00a0Minimal Undesignable RNA Structure Motifs with\u00a0Rotational Invariance","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4409739430","doi":"https://doi.org/10.1007/978-3-031-90252-9_10"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-90252-9_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-90252-9_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016330639","display_name":"Tianshuo Zhou","orcid":"https://orcid.org/0009-0008-4804-0825"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tianshuo Zhou","raw_affiliation_strings":["School of EECS, Oregon State University, Corvallis, OR, 97330, USA"],"raw_orcid":"https://orcid.org/0009-0008-4804-0825","affiliations":[{"raw_affiliation_string":"School of EECS, Oregon State University, Corvallis, OR, 97330, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101178483","display_name":"Apoorv Malik","orcid":"https://orcid.org/0009-0004-3351-7097"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Apoorv Malik","raw_affiliation_strings":["School of EECS, Oregon State University, Corvallis, OR, 97330, USA"],"raw_orcid":"https://orcid.org/0009-0004-3351-7097","affiliations":[{"raw_affiliation_string":"School of EECS, Oregon State University, Corvallis, OR, 97330, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102903659","display_name":"Wei Yu Tang","orcid":"https://orcid.org/0009-0008-1141-9479"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Yu Tang","raw_affiliation_strings":["Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, 90089, USA","School of EECS, Oregon State University, Corvallis, OR, 97330, USA"],"raw_orcid":"https://orcid.org/0009-0008-1141-9479","affiliations":[{"raw_affiliation_string":"Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, 90089, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"School of EECS, Oregon State University, Corvallis, OR, 97330, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002272329","display_name":"David H. Mathews","orcid":"https://orcid.org/0000-0002-2907-6557"},"institutions":[{"id":"https://openalex.org/I28792581","display_name":"University of Rochester Medical Center","ror":"https://ror.org/00trqv719","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I28792581","https://openalex.org/I5388228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David H. Mathews","raw_affiliation_strings":["Center for RNA Biology,  University of Rochester Medical Center, Rochester, NY, 14642, USA","Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA","Department\u00a0of Biostatistics and Computational Biology,  University of Rochester Medical Center, Rochester, NY, 14642, USA"],"raw_orcid":"https://orcid.org/0000-0002-2907-6557","affiliations":[{"raw_affiliation_string":"Center for RNA Biology,  University of Rochester Medical Center, Rochester, NY, 14642, USA","institution_ids":["https://openalex.org/I28792581"]},{"raw_affiliation_string":"Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA","institution_ids":["https://openalex.org/I28792581"]},{"raw_affiliation_string":"Department\u00a0of Biostatistics and Computational Biology,  University of Rochester Medical Center, Rochester, NY, 14642, USA","institution_ids":["https://openalex.org/I28792581"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006404928","display_name":"Liang Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Huang","raw_affiliation_strings":["Department of Biochemistry and Biophysics, Oregon State University, Corvallis, OR, 97330, USA","School of EECS, Oregon State University, Corvallis, OR, 97330, USA"],"raw_orcid":"https://orcid.org/0000-0001-6444-7045","affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, Oregon State University, Corvallis, OR, 97330, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"School of EECS, Oregon State University, Corvallis, OR, 97330, USA","institution_ids":["https://openalex.org/I131249849"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5016330639"],"corresponding_institution_ids":["https://openalex.org/I131249849"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":11.0038,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.9757581,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"153","last_page":"174"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.665793240070343},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6484689712524414},{"id":"https://openalex.org/keywords/rotational-invariance","display_name":"Rotational invariance","score":0.5388443470001221},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4800799489021301},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38217973709106445},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35746634006500244},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0687863826751709},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.06194424629211426}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.665793240070343},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6484689712524414},{"id":"https://openalex.org/C33098168","wikidata":"https://www.wikidata.org/wiki/Q108537107","display_name":"Rotational invariance","level":2,"score":0.5388443470001221},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4800799489021301},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38217973709106445},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35746634006500244},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0687863826751709},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.06194424629211426},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-90252-9_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-90252-9_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.5}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1860906034","https://openalex.org/W1964400019","https://openalex.org/W1967538502","https://openalex.org/W1984720286","https://openalex.org/W2004945910","https://openalex.org/W2016348255","https://openalex.org/W2018414460","https://openalex.org/W2056151289","https://openalex.org/W2070136856","https://openalex.org/W2086561953","https://openalex.org/W2096327663","https://openalex.org/W2096838621","https://openalex.org/W2102017611","https://openalex.org/W2102225325","https://openalex.org/W2109638684","https://openalex.org/W2111342151","https://openalex.org/W2118564824","https://openalex.org/W2125615424","https://openalex.org/W2142056356","https://openalex.org/W2146721220","https://openalex.org/W2159117141","https://openalex.org/W2276634778","https://openalex.org/W2332111000","https://openalex.org/W2807962979","https://openalex.org/W2887432069","https://openalex.org/W2925387295","https://openalex.org/W2927347551","https://openalex.org/W2954102902","https://openalex.org/W2973044881","https://openalex.org/W3004731604","https://openalex.org/W3185894165","https://openalex.org/W3197721376","https://openalex.org/W4234879553","https://openalex.org/W4234887284","https://openalex.org/W4255547833","https://openalex.org/W4283010458","https://openalex.org/W4300861274","https://openalex.org/W4382631633","https://openalex.org/W4390744090","https://openalex.org/W4396966065"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2389214306","https://openalex.org/W2965083567","https://openalex.org/W4235240664","https://openalex.org/W1838576100","https://openalex.org/W2095886385","https://openalex.org/W2889616422","https://openalex.org/W2795228231","https://openalex.org/W2143179688"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}