{"id":"https://openalex.org/W4410411716","doi":"https://doi.org/10.1007/978-3-031-89704-7_5","title":"Gene Set-Focused Analysis of RNA-Seq Data with MIEP (Make-It-Easy-Pipeline)","display_name":"Gene Set-Focused Analysis of RNA-Seq Data with MIEP (Make-It-Easy-Pipeline)","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4410411716","doi":"https://doi.org/10.1007/978-3-031-89704-7_5"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-89704-7_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-89704-7_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070594419","display_name":"Alberto Corradin","orcid":"https://orcid.org/0000-0003-2605-9492"},"institutions":[{"id":"https://openalex.org/I4210109345","display_name":"Istituto Oncologico Veneto","ror":"https://ror.org/01xcjmy57","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I4210153126","display_name":"Istituti di Ricovero e Cura a Carattere Scientifico","ror":"https://ror.org/04tfzc498","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Alberto Corradin","raw_affiliation_strings":["Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy"],"raw_orcid":"https://orcid.org/0000-0003-2605-9492","affiliations":[{"raw_affiliation_string":"Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy","institution_ids":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013496328","display_name":"Francesco Ciccarese","orcid":"https://orcid.org/0000-0002-7237-6942"},"institutions":[{"id":"https://openalex.org/I4210109345","display_name":"Istituto Oncologico Veneto","ror":"https://ror.org/01xcjmy57","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I4210153126","display_name":"Istituti di Ricovero e Cura a Carattere Scientifico","ror":"https://ror.org/04tfzc498","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Ciccarese","raw_affiliation_strings":["Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy"],"raw_orcid":"https://orcid.org/0000-0002-7237-6942","affiliations":[{"raw_affiliation_string":"Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy","institution_ids":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078492612","display_name":"Vittoria Raimondi","orcid":"https://orcid.org/0000-0003-2807-5461"},"institutions":[{"id":"https://openalex.org/I4210109345","display_name":"Istituto Oncologico Veneto","ror":"https://ror.org/01xcjmy57","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I4210153126","display_name":"Istituti di Ricovero e Cura a Carattere Scientifico","ror":"https://ror.org/04tfzc498","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Vittoria Raimondi","raw_affiliation_strings":["Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy"],"raw_orcid":"https://orcid.org/0000-0003-2807-5461","affiliations":[{"raw_affiliation_string":"Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy","institution_ids":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051550047","display_name":"Loredana Urso","orcid":"https://orcid.org/0000-0001-9805-7686"},"institutions":[{"id":"https://openalex.org/I4210109345","display_name":"Istituto Oncologico Veneto","ror":"https://ror.org/01xcjmy57","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I4210153126","display_name":"Istituti di Ricovero e Cura a Carattere Scientifico","ror":"https://ror.org/04tfzc498","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Loredana Urso","raw_affiliation_strings":["Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy"],"raw_orcid":"https://orcid.org/0000-0001-9805-7686","affiliations":[{"raw_affiliation_string":"Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy","institution_ids":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081717496","display_name":"Micol Silic\u2010Benussi","orcid":"https://orcid.org/0000-0001-8561-1027"},"institutions":[{"id":"https://openalex.org/I4210109345","display_name":"Istituto Oncologico Veneto","ror":"https://ror.org/01xcjmy57","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I4210153126","display_name":"Istituti di Ricovero e Cura a Carattere Scientifico","ror":"https://ror.org/04tfzc498","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Micol Silic-Benussi","raw_affiliation_strings":["Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy"],"raw_orcid":"https://orcid.org/0000-0001-8561-1027","affiliations":[{"raw_affiliation_string":"Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy","institution_ids":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009916021","display_name":"Vincenzo Ciminale","orcid":"https://orcid.org/0000-0001-6197-1802"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]},{"id":"https://openalex.org/I4210109345","display_name":"Istituto Oncologico Veneto","ror":"https://ror.org/01xcjmy57","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I4210153126","display_name":"Istituti di Ricovero e Cura a Carattere Scientifico","ror":"https://ror.org/04tfzc498","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Vincenzo Ciminale","raw_affiliation_strings":["Department of Surgery, Oncology and Gastroenterology, University of Padova, Padova, Italy","Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy"],"raw_orcid":"https://orcid.org/0000-0001-6197-1802","affiliations":[{"raw_affiliation_string":"Department of Surgery, Oncology and Gastroenterology, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Veneto Institute of Oncology IOV \u2013 IRCCS, Padova, Italy","institution_ids":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070594419"],"corresponding_institution_ids":["https://openalex.org/I4210109345","https://openalex.org/I4210153126"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19584673,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"58","last_page":"68"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7790845632553101},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7243238687515259},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.5845000147819519},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.527280867099762},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4372440576553345},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4199329614639282},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34189939498901367},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22704729437828064},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09977266192436218},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08486419916152954},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08059811592102051},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07355606555938721},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.06586351990699768}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7790845632553101},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7243238687515259},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.5845000147819519},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.527280867099762},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4372440576553345},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4199329614639282},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34189939498901367},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22704729437828064},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09977266192436218},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08486419916152954},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08059811592102051},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07355606555938721},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.06586351990699768}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-89704-7_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-89704-7_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1493790738","https://openalex.org/W1875061881","https://openalex.org/W2038252445","https://openalex.org/W2038645369","https://openalex.org/W2045803758","https://openalex.org/W2045949302","https://openalex.org/W2066652856","https://openalex.org/W2110940238","https://openalex.org/W2123998733","https://openalex.org/W2130410032","https://openalex.org/W2136482257","https://openalex.org/W2143481518","https://openalex.org/W2145825942","https://openalex.org/W2152239989","https://openalex.org/W2179438025","https://openalex.org/W2263254107","https://openalex.org/W2748728020","https://openalex.org/W2802080790","https://openalex.org/W2949081006","https://openalex.org/W2950221693","https://openalex.org/W2981215627","https://openalex.org/W3133624575","https://openalex.org/W4246259708","https://openalex.org/W4250129730","https://openalex.org/W4254687493","https://openalex.org/W4297710664","https://openalex.org/W4362672701","https://openalex.org/W4399574401","https://openalex.org/W4399578546","https://openalex.org/W6869699453"],"related_works":["https://openalex.org/W4409737169","https://openalex.org/W4234711916","https://openalex.org/W2027108423","https://openalex.org/W1855666948","https://openalex.org/W2758561209","https://openalex.org/W1548095260","https://openalex.org/W2343361478","https://openalex.org/W2594414941","https://openalex.org/W2781711915","https://openalex.org/W2112817590"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}