{"id":"https://openalex.org/W4410371904","doi":"https://doi.org/10.1007/978-3-031-89704-7_2","title":"Proteins Transcription Factor Prediction Using Graph Neural Networks","display_name":"Proteins Transcription Factor Prediction Using Graph Neural Networks","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4410371904","doi":"https://doi.org/10.1007/978-3-031-89704-7_2"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-89704-7_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-89704-7_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hdl.handle.net/10447/680044","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086068165","display_name":"Domenico Amato","orcid":"https://orcid.org/0000-0003-4004-9338"},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Domenico Amato","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Palermo, 90123, Palermo, Italy"],"raw_orcid":"https://orcid.org/0000-0003-4004-9338","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Palermo, 90123, Palermo, Italy","institution_ids":["https://openalex.org/I900890020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014585764","display_name":"Salvatore Calderaro","orcid":"https://orcid.org/0000-0003-0999-6345"},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Salvatore Calderaro","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Palermo, 90123, Palermo, Italy"],"raw_orcid":"https://orcid.org/0000-0003-0999-6345","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Palermo, 90123, Palermo, Italy","institution_ids":["https://openalex.org/I900890020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089392019","display_name":"Giosu\u00e8 Lo Bosco","orcid":"https://orcid.org/0000-0002-1602-0693"},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giosu\u00e9 Lo Bosco","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Palermo, 90123, Palermo, Italy"],"raw_orcid":"https://orcid.org/0000-0002-1602-0693","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Palermo, 90123, Palermo, Italy","institution_ids":["https://openalex.org/I900890020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039863688","display_name":"Filippo Vella","orcid":"https://orcid.org/0000-0002-2502-0062"},"institutions":[{"id":"https://openalex.org/I3005160176","display_name":"Institute for High Performance Computing and Networking","ror":"https://ror.org/04r5fge26","country_code":"IT","type":"facility","lineage":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Filippo Vella","raw_affiliation_strings":["Institute for High-Performance Computing and Networking, National Research Council of Italy, 90146, Palermo, Italy"],"raw_orcid":"https://orcid.org/0000-0002-2502-0062","affiliations":[{"raw_affiliation_string":"Institute for High-Performance Computing and Networking, National Research Council of Italy, 90146, Palermo, Italy","institution_ids":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011731694","display_name":"Riccardo Rizzo","orcid":"https://orcid.org/0000-0001-5007-6925"},"institutions":[{"id":"https://openalex.org/I3005160176","display_name":"Institute for High Performance Computing and Networking","ror":"https://ror.org/04r5fge26","country_code":"IT","type":"facility","lineage":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Rizzo","raw_affiliation_strings":["Institute for High-Performance Computing and Networking, National Research Council of Italy, 90146, Palermo, Italy"],"raw_orcid":"https://orcid.org/0000-0001-5007-6925","affiliations":[{"raw_affiliation_string":"Institute for High-Performance Computing and Networking, National Research Council of Italy, 90146, Palermo, Italy","institution_ids":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5086068165"],"corresponding_institution_ids":["https://openalex.org/I900890020"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":16.5057,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.99000782,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"15","last_page":"27"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7902442216873169},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.49456116557121277},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48921942710876465},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.44311416149139404},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.421995609998703},{"id":"https://openalex.org/keywords/factor","display_name":"Factor (programming language)","score":0.4111766815185547},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.31434935331344604},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14258509874343872},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08338016271591187},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07511049509048462},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06660178303718567}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7902442216873169},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.49456116557121277},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48921942710876465},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.44311416149139404},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.421995609998703},{"id":"https://openalex.org/C2781039887","wikidata":"https://www.wikidata.org/wiki/Q1391724","display_name":"Factor (programming language)","level":2,"score":0.4111766815185547},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.31434935331344604},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14258509874343872},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08338016271591187},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07511049509048462},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06660178303718567}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-031-89704-7_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-89704-7_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:iris.unipa.it:10447/680044","is_oa":true,"landing_page_url":"https://hdl.handle.net/10447/680044","pdf_url":null,"source":{"id":"https://openalex.org/S4306401065","display_name":"Nova Science Publishers (Nova Science Publishers, Inc.)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/bookPart"}],"best_oa_location":{"id":"pmh:oai:iris.unipa.it:10447/680044","is_oa":true,"landing_page_url":"https://hdl.handle.net/10447/680044","pdf_url":null,"source":{"id":"https://openalex.org/S4306401065","display_name":"Nova Science Publishers (Nova Science Publishers, Inc.)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/bookPart"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W569478347","https://openalex.org/W2041391522","https://openalex.org/W2073200397","https://openalex.org/W2086802511","https://openalex.org/W2100198674","https://openalex.org/W2555479509","https://openalex.org/W2600202123","https://openalex.org/W2607864135","https://openalex.org/W2810037108","https://openalex.org/W2855293443","https://openalex.org/W2889195981","https://openalex.org/W2900840208","https://openalex.org/W2970971581","https://openalex.org/W3000821406","https://openalex.org/W3038325793","https://openalex.org/W3116625060","https://openalex.org/W3178677023","https://openalex.org/W4382394628","https://openalex.org/W4400034133","https://openalex.org/W4402696263","https://openalex.org/W6739901393","https://openalex.org/W6786048916"],"related_works":["https://openalex.org/W2391251536","https://openalex.org/W2362198218","https://openalex.org/W2019521278","https://openalex.org/W1984922432","https://openalex.org/W2375008505","https://openalex.org/W2003033456","https://openalex.org/W1982750869","https://openalex.org/W2085756966","https://openalex.org/W2350679292","https://openalex.org/W2086348228"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
