{"id":"https://openalex.org/W4406843972","doi":"https://doi.org/10.1007/978-3-031-78977-9_16","title":"Latent Embedding Based on a Transcription-Decay Decomposition of mRNA Dynamics Using Self-supervised CoxPH","display_name":"Latent Embedding Based on a Transcription-Decay Decomposition of mRNA Dynamics Using Self-supervised CoxPH","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4406843972","doi":"https://doi.org/10.1007/978-3-031-78977-9_16"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-78977-9_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-78977-9_16","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092085776","display_name":"Martin \u0160pendl","orcid":"https://orcid.org/0009-0008-0796-8985"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":true,"raw_author_name":"Martin \u0160pendl","raw_affiliation_strings":["Faculty of Computer and Information Science, University of Ljubljana, Ve\u010dna Pot 113, Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0009-0008-0796-8985","affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Science, University of Ljubljana, Ve\u010dna Pot 113, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070653907","display_name":"Toma\u017e Curk","orcid":"https://orcid.org/0000-0003-4888-7256"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Toma\u017e Curk","raw_affiliation_strings":["Faculty of Computer and Information Science, University of Ljubljana, Ve\u010dna Pot 113, Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0000-0003-4888-7256","affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Science, University of Ljubljana, Ve\u010dna Pot 113, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073792028","display_name":"Bla\u017e Zupan","orcid":"https://orcid.org/0000-0002-5864-7056"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Bla\u017e Zupan","raw_affiliation_strings":["Faculty of Computer and Information Science, University of Ljubljana, Ve\u010dna Pot 113, Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0000-0002-5864-7056","affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Science, University of Ljubljana, Ve\u010dna Pot 113, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5092085776"],"corresponding_institution_ids":["https://openalex.org/I153976015"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02519767,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"244","last_page":"259"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7231613397598267},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6501966118812561},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.5831307768821716},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.5564784407615662},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.4995613098144531},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.43167731165885925},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38664087653160095},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1060371994972229},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0924631655216217},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.05164068937301636}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7231613397598267},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6501966118812561},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.5831307768821716},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5564784407615662},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.4995613098144531},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.43167731165885925},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38664087653160095},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1060371994972229},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0924631655216217},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.05164068937301636},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-78977-9_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-78977-9_16","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1975900269","https://openalex.org/W2005895632","https://openalex.org/W2082982706","https://openalex.org/W2108068107","https://openalex.org/W2121111814","https://openalex.org/W2125310307","https://openalex.org/W2177899970","https://openalex.org/W2612467560","https://openalex.org/W2770808765","https://openalex.org/W2790179710","https://openalex.org/W2808686685","https://openalex.org/W2901677030","https://openalex.org/W2944727022","https://openalex.org/W2949676527","https://openalex.org/W2991920366","https://openalex.org/W3024013192","https://openalex.org/W3128646645","https://openalex.org/W3163993681","https://openalex.org/W3204708585","https://openalex.org/W4247110653","https://openalex.org/W4323865263","https://openalex.org/W4376643505","https://openalex.org/W4380869622"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2037549926","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W2419146053","https://openalex.org/W4388890789","https://openalex.org/W2088247287","https://openalex.org/W1998203703"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
