{"id":"https://openalex.org/W4403757209","doi":"https://doi.org/10.1007/978-3-031-75599-6_10","title":"On the Expressiveness of Petri Nets for\u00a0Modeling Biological Processes: The\u00a0Case for mRNA Translation and\u00a0Protein Synthesis","display_name":"On the Expressiveness of Petri Nets for\u00a0Modeling Biological Processes: The\u00a0Case for mRNA Translation and\u00a0Protein Synthesis","publication_year":2024,"publication_date":"2024-10-25","ids":{"openalex":"https://openalex.org/W4403757209","doi":"https://doi.org/10.1007/978-3-031-75599-6_10"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-75599-6_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-75599-6_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114403996","display_name":"Luis Henrique Costa Neto","orcid":null},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Luis Henrique Costa Neto","raw_affiliation_strings":["Informatics Dept., Pontifical Catholic Univ. of Rio de Janeiro (PUC-Rio), Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0009-0009-8378-6240","affiliations":[{"raw_affiliation_string":"Informatics Dept., Pontifical Catholic Univ. of Rio de Janeiro (PUC-Rio), Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085416987","display_name":"S\u00e9rgio Lifschitz","orcid":"https://orcid.org/0000-0003-3073-3734"},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"S. Lifschitz","raw_affiliation_strings":["Informatics Dept., Pontifical Catholic Univ. of Rio de Janeiro (PUC-Rio), Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0000-0003-3073-3734","affiliations":[{"raw_affiliation_string":"Informatics Dept., Pontifical Catholic Univ. of Rio de Janeiro (PUC-Rio), Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060933776","display_name":"Fernanda Bai\u00e3o","orcid":"https://orcid.org/0000-0001-7932-7134"},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"F. Bai\u00e3o","raw_affiliation_strings":["Industrial Eng. Dept., Pontifical Catholic Univ. of Rio de Janeiro (PUC-Rio), Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0000-0001-7932-7134","affiliations":[{"raw_affiliation_string":"Industrial Eng. Dept., Pontifical Catholic Univ. of Rio de Janeiro (PUC-Rio), Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037254032","display_name":"Marcos Catanho","orcid":"https://orcid.org/0000-0002-9184-4158"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"M. Catanho","raw_affiliation_strings":["Laborat\u00f3rio de Gen\u00e9tica Molecular de Microrganismos, Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-9184-4158","affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Gen\u00e9tica Molecular de Microrganismos, Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103073124","display_name":"Ant\u00f4nio Bas\u00edlio de Miranda","orcid":"https://orcid.org/0000-0002-4977-7350"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"A. B. de Miranda","raw_affiliation_strings":["Laborat\u00f3rio de Gen\u00e9tica Molecular de Microrganismos, Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-4977-7350","affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Gen\u00e9tica Molecular de Microrganismos, Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091129860","display_name":"Edward Hermann H\u00e6usler","orcid":"https://orcid.org/0000-0002-4999-7476"},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"E. H. Haeusler","raw_affiliation_strings":["Informatics Dept., Pontifical Catholic Univ. of Rio de Janeiro (PUC-Rio), Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-4999-7476","affiliations":[{"raw_affiliation_string":"Informatics Dept., Pontifical Catholic Univ. of Rio de Janeiro (PUC-Rio), Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5114403996"],"corresponding_institution_ids":["https://openalex.org/I2699952"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.8424,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.90530117,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"137","last_page":"147"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11125","display_name":"Petri Nets in System Modeling","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.8599128723144531},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8226381540298462},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.7281744480133057},{"id":"https://openalex.org/keywords/process-architecture","display_name":"Process architecture","score":0.5021514892578125},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.45048096776008606},{"id":"https://openalex.org/keywords/stochastic-petri-net","display_name":"Stochastic Petri net","score":0.44915997982025146},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.42220497131347656},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38036057353019714},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3723422884941101},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.35751432180404663},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3213343918323517},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.0692179799079895}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.8599128723144531},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8226381540298462},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.7281744480133057},{"id":"https://openalex.org/C136155141","wikidata":"https://www.wikidata.org/wiki/Q7247260","display_name":"Process architecture","level":3,"score":0.5021514892578125},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.45048096776008606},{"id":"https://openalex.org/C197551870","wikidata":"https://www.wikidata.org/wiki/Q7617809","display_name":"Stochastic Petri net","level":3,"score":0.44915997982025146},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.42220497131347656},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38036057353019714},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3723422884941101},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.35751432180404663},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3213343918323517},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0692179799079895},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-75599-6_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-75599-6_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1001283980","https://openalex.org/W1550695177","https://openalex.org/W1603634965","https://openalex.org/W1974557906","https://openalex.org/W1996109622","https://openalex.org/W2008518517","https://openalex.org/W2034768847","https://openalex.org/W2152504785","https://openalex.org/W2797189245","https://openalex.org/W3097763927","https://openalex.org/W3175608026","https://openalex.org/W4293811923","https://openalex.org/W4386363600"],"related_works":["https://openalex.org/W1543378523","https://openalex.org/W2257573499","https://openalex.org/W2381491984","https://openalex.org/W4386989863","https://openalex.org/W2064254377","https://openalex.org/W2901841247","https://openalex.org/W1847176793","https://openalex.org/W2148229336","https://openalex.org/W2001922003","https://openalex.org/W117466158"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}