{"id":"https://openalex.org/W4400695122","doi":"https://doi.org/10.1007/978-3-031-63536-6_1","title":"Natural Language Hypotheses in Scientific Papers and How to Tame Them","display_name":"Natural Language Hypotheses in Scientific Papers and How to Tame Them","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4400695122","doi":"https://doi.org/10.1007/978-3-031-63536-6_1"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-63536-6_1","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-031-63536-6_1","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-031-63536-6_1.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/978-3-031-63536-6_1.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046258663","display_name":"Tina Heger","orcid":"https://orcid.org/0000-0002-5522-5632"},"institutions":[{"id":"https://openalex.org/I4210116314","display_name":"Leibniz Institute of Freshwater Ecology and Inland Fisheries","ror":"https://ror.org/01nftxb06","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210116314"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Tina Heger","raw_affiliation_strings":["Institute of Biology, Freie Universit\u00e4t Berlin, Berlin, Germany","Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany","TUM School of Life Sciences, Technical University of Munich, Freising, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Biology, Freie Universit\u00e4t Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany","institution_ids":["https://openalex.org/I4210116314"]},{"raw_affiliation_string":"TUM School of Life Sciences, Technical University of Munich, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046373717","display_name":"Alsayed Algergawy","orcid":"https://orcid.org/0000-0002-8550-4720"},"institutions":[{"id":"https://openalex.org/I186354981","display_name":"University of Passau","ror":"https://ror.org/05ydjnb78","country_code":"DE","type":"education","lineage":["https://openalex.org/I186354981"]},{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alsayed Algergawy","raw_affiliation_strings":["Data and Knowledge Engineering, University of Passau, Passau, Germany","Institute for Informatics, Friedrich-Schiller-University Jena, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Data and Knowledge Engineering, University of Passau, Passau, Germany","institution_ids":["https://openalex.org/I186354981"]},{"raw_affiliation_string":"Institute for Informatics, Friedrich-Schiller-University Jena, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092596222","display_name":"Marc Brinner","orcid":"https://orcid.org/0000-0002-5121-2922"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marc Brinner","raw_affiliation_strings":["Faculty of Linguistics and Literature Studies, University of Bielefeld, Bielefeld, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Linguistics and Literature Studies, University of Bielefeld, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021652198","display_name":"Jonathan M. Jeschke","orcid":"https://orcid.org/0000-0003-3328-4217"},"institutions":[{"id":"https://openalex.org/I4210116314","display_name":"Leibniz Institute of Freshwater Ecology and Inland Fisheries","ror":"https://ror.org/01nftxb06","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210116314"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonathan M. Jeschke","raw_affiliation_strings":["Institute of Biology, Freie Universit\u00e4t Berlin, Berlin, Germany","Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Biology, Freie Universit\u00e4t Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany","institution_ids":["https://openalex.org/I4210116314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024963110","display_name":"Birgitta K\u00f6nig\u2010Ries","orcid":"https://orcid.org/0000-0002-2382-9722"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Birgitta K\u00f6nig-Ries","raw_affiliation_strings":["Institute for Informatics, Friedrich-Schiller-University Jena, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Informatics, Friedrich-Schiller-University Jena, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050528093","display_name":"Daniel Mietchen","orcid":"https://orcid.org/0000-0001-9488-1870"},"institutions":[{"id":"https://openalex.org/I4210116314","display_name":"Leibniz Institute of Freshwater Ecology and Inland Fisheries","ror":"https://ror.org/01nftxb06","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210116314"]},{"id":"https://openalex.org/I4210147267","display_name":"Ronin Institute","ror":"https://ror.org/04awze035","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210147267"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Daniel Mietchen","raw_affiliation_strings":["Institute for Globally Distributed Open Research and Education (IGDORE), Jena, Germany","Institute of Biology, Freie Universit\u00e4t Berlin, Berlin, Germany","Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany","Ronin Institute for Independent Scholarship, Montclair, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Globally Distributed Open Research and Education (IGDORE), Jena, Germany","institution_ids":[]},{"raw_affiliation_string":"Institute of Biology, Freie Universit\u00e4t Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany","institution_ids":["https://openalex.org/I4210116314"]},{"raw_affiliation_string":"Ronin Institute for Independent Scholarship, Montclair, NJ, USA","institution_ids":["https://openalex.org/I4210147267"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078051602","display_name":"Sina Zarrie\u00df","orcid":"https://orcid.org/0000-0002-1384-1218"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sina Zarrie\u00df","raw_affiliation_strings":["Faculty of Linguistics and Literature Studies, University of Bielefeld, Bielefeld, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Linguistics and Literature Studies, University of Bielefeld, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5046258663"],"corresponding_institution_ids":["https://openalex.org/I4210116314","https://openalex.org/I62916508","https://openalex.org/I75951250"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":{"value":5000,"currency":"EUR","value_usd":5392},"fwci":0.8082,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.70851446,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"3","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8361612558364868},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.5151649713516235},{"id":"https://openalex.org/keywords/natural","display_name":"Natural (archaeology)","score":0.5129334926605225},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39973294734954834},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3627518117427826},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.34876102209091187},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.0908847451210022},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.0676908791065216}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8361612558364868},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.5151649713516235},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.5129334926605225},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39973294734954834},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3627518117427826},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.34876102209091187},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0908847451210022},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0676908791065216}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-63536-6_1","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-031-63536-6_1","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-031-63536-6_1.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.1007/978-3-031-63536-6_1","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-031-63536-6_1","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-031-63536-6_1.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400695122.pdf","grobid_xml":"https://content.openalex.org/works/W4400695122.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W581684831","https://openalex.org/W2055049967","https://openalex.org/W2135464230","https://openalex.org/W2158495390","https://openalex.org/W2162153683","https://openalex.org/W2210876327","https://openalex.org/W2767995756","https://openalex.org/W2774645926","https://openalex.org/W2802057120","https://openalex.org/W2963167730","https://openalex.org/W2979666134","https://openalex.org/W3000790538","https://openalex.org/W3010336026","https://openalex.org/W3013435873","https://openalex.org/W3106052318","https://openalex.org/W3113378701","https://openalex.org/W3123354371","https://openalex.org/W3134535214","https://openalex.org/W3139786333","https://openalex.org/W3193410082","https://openalex.org/W3195033711","https://openalex.org/W3195180972","https://openalex.org/W3215545144","https://openalex.org/W4206961369","https://openalex.org/W4220758347","https://openalex.org/W4232387830","https://openalex.org/W4286890460","https://openalex.org/W4318214831","https://openalex.org/W4366351019","https://openalex.org/W4385490607","https://openalex.org/W4385708356","https://openalex.org/W4386406337","https://openalex.org/W4388294702","https://openalex.org/W4391439152","https://openalex.org/W4393657035","https://openalex.org/W4400695274"],"related_works":["https://openalex.org/W4283262748","https://openalex.org/W2502773048","https://openalex.org/W4252362398","https://openalex.org/W48866389","https://openalex.org/W2117651364","https://openalex.org/W3112533414","https://openalex.org/W3204019825","https://openalex.org/W4226226396","https://openalex.org/W3153750606","https://openalex.org/W4308854837"],"abstract_inverted_index":{"Abstract":[0],"Hypotheses":[1],"are":[2,30,56,140,191],"critical":[3],"components":[4],"of":[5,95,104,146,182,194,239],"scientific":[6,20,27,54],"argumentation.":[7],"Knowing":[8],"established":[9,65],"hypotheses":[10,29,73,90,101,130],"is":[11,42],"often":[12],"a":[13,23,86,109,114,152,183,197,200,233],"prerequisite":[14],"for":[15,33,48,52,59,88,155],"following":[16],"and":[17,74,77,113,134,188,210,223],"contributing":[18],"to":[19,44,57,63,67,78,128,158,170,199],"arguments":[21],"in":[22,91,131,203,222],"research":[24,93,148],"field.":[25,149],"In":[26],"publications,":[28],"usually":[31],"presented":[32],"specific":[34,72],"empirical":[35],"settings,":[36],"whereas":[37],"the":[38,69,92,122,137,144,147,167,204],"related":[39],"general":[40,75],"claim":[41],"assumed":[43],"be":[45,126,159,242],"known.":[46],"Prerequisites":[47],"developing":[49],"argumentation":[50],"machines":[51],"assisting":[53],"workflows":[55],"account":[58],"domain-specific":[60],"concepts":[61,139],"needed":[62],"understand":[64],"hypotheses,":[66],"clarify":[68],"relationships":[70],"between":[71,117],"claims,":[76],"take":[79],"steps":[80],"towards":[81],"formalization.":[82],"Here,":[83],"we":[84,175],"develop":[85],"framework":[87],"formalizing":[89],"field":[94],"invasion":[96,132],"biology.":[97],"We":[98,119,150,165],"suggest":[99,151],"conceiving":[100],"as":[102,180],"consisting":[103],"three":[105,192],"basic":[106],"building":[107],"blocks:":[108],"subject,":[110],"an":[111],"object,":[112],"hypothesized":[115,172],"relationship":[116],"them.":[118],"show":[120],"how":[121],"subject-object-relation":[123],"pattern":[124],"can":[125],"applied":[127],"well-known":[129],"biology":[133],"demonstrate":[135],"that":[136],"contained":[138],"quite":[141],"diverse,":[142],"mirroring":[143],"complexity":[145],"stepwise":[153],"approach":[154],"modeling":[156],"them":[157],"machine-understandable":[160],"using":[161],"semantic":[162],"web":[163],"ontologies.":[164],"use":[166],"SuperPattern":[168],"Ontology":[169],"categorize":[171],"relationships.":[173,230],"Further,":[174],"recommend":[176],"treating":[177],"every":[178],"hypothesis":[179,234],"part":[181],"hierarchical":[184],"system":[185],"with":[186],"\u2018parents\u2019":[187],"\u2018children\u2019.":[189],"There":[190],"ways":[193],"moving":[195],"from":[196],"higher":[198],"lower":[201],"level":[202],"hierarchy:":[205],"(i)":[206],"specification,":[207],"(ii)":[208],"decomposition,":[209],"(iii)":[211],"operationalization.":[212],"Specification":[213],"involves":[214],"exchanging":[215],"subjects":[216],"or":[217],"objects.":[218],"Decomposition":[219],"means":[220,235],"zooming":[221],"making":[224],"explicit":[225],"assumptions":[226],"about":[227],"underlying":[228],"(causal)":[229],"Finally,":[231],"operationalizing":[232],"providing":[236],"concrete":[237],"descriptions":[238],"what":[240],"will":[241],"empirically":[243],"tested.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
