{"id":"https://openalex.org/W4399926755","doi":"https://doi.org/10.1007/978-3-031-63227-3_17","title":"Integrating Machine Learning and Biological Context for Single-Cell Gene Regulatory Network Inference","display_name":"Integrating Machine Learning and Biological Context for Single-Cell Gene Regulatory Network Inference","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4399926755","doi":"https://doi.org/10.1007/978-3-031-63227-3_17"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-63227-3_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-63227-3_17","pdf_url":null,"source":{"id":"https://openalex.org/S4210185096","display_name":"IFIP advances in information and communication technology","issn_l":"1868-422X","issn":["1868-422X","1868-4238"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IFIP Advances in Information and Communication Technology","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/hal-05132720","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046469994","display_name":"Dimitrios E. Koumadorakis","orcid":"https://orcid.org/0009-0007-3963-3357"},"institutions":[{"id":"https://openalex.org/I187792471","display_name":"Ionian University","ror":"https://ror.org/01xm4n520","country_code":"GR","type":"education","lineage":["https://openalex.org/I187792471"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Dimitrios E. Koumadorakis","raw_affiliation_strings":["Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece","institution_ids":["https://openalex.org/I187792471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077147419","display_name":"Georgios \u039d. Dimitrakopoulos","orcid":"https://orcid.org/0000-0002-7817-9552"},"institutions":[{"id":"https://openalex.org/I187792471","display_name":"Ionian University","ror":"https://ror.org/01xm4n520","country_code":"GR","type":"education","lineage":["https://openalex.org/I187792471"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Georgios N. Dimitrakopoulos","raw_affiliation_strings":["Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece","institution_ids":["https://openalex.org/I187792471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051663494","display_name":"Themis P. Exarchos","orcid":"https://orcid.org/0000-0001-9420-9419"},"institutions":[{"id":"https://openalex.org/I187792471","display_name":"Ionian University","ror":"https://ror.org/01xm4n520","country_code":"GR","type":"education","lineage":["https://openalex.org/I187792471"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Themis P. Exarchos","raw_affiliation_strings":["Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece","institution_ids":["https://openalex.org/I187792471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002406655","display_name":"Panagiotis Vlamos","orcid":"https://orcid.org/0000-0003-0053-7847"},"institutions":[{"id":"https://openalex.org/I187792471","display_name":"Ionian University","ror":"https://ror.org/01xm4n520","country_code":"GR","type":"education","lineage":["https://openalex.org/I187792471"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Panagiotis Vlamos","raw_affiliation_strings":["Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece","institution_ids":["https://openalex.org/I187792471"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082119404","display_name":"Aristidis G. Vrahatis","orcid":"https://orcid.org/0000-0003-1892-0000"},"institutions":[{"id":"https://openalex.org/I187792471","display_name":"Ionian University","ror":"https://ror.org/01xm4n520","country_code":"GR","type":"education","lineage":["https://openalex.org/I187792471"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Aristidis G. Vrahatis","raw_affiliation_strings":["Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, Corfu, Greece","institution_ids":["https://openalex.org/I187792471"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5046469994"],"corresponding_institution_ids":["https://openalex.org/I187792471"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07687723,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"250","last_page":"260"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.733636200428009},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.712372899055481},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5704556703567505},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5155141353607178},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49103808403015137},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.48129454255104065},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4394799768924713},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37554097175598145},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3263574242591858},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3065069913864136},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19768136739730835},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16623860597610474}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.733636200428009},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.712372899055481},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5704556703567505},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5155141353607178},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49103808403015137},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.48129454255104065},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4394799768924713},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37554097175598145},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3263574242591858},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3065069913864136},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19768136739730835},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16623860597610474},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-031-63227-3_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-63227-3_17","pdf_url":null,"source":{"id":"https://openalex.org/S4210185096","display_name":"IFIP advances in information and communication technology","issn_l":"1868-422X","issn":["1868-422X","1868-4238"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IFIP Advances in Information and Communication Technology","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:hal-05132720v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-05132720","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"20th IFIP International Conference on Artificial Intelligence Applications and Innovations (AIAI), Jun 2024, Corfu, Greece. pp.250-260, &#x27E8;10.1007/978-3-031-63227-3_17&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-05132720v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-05132720","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"20th IFIP International Conference on Artificial Intelligence Applications and Innovations (AIAI), Jun 2024, Corfu, Greece. pp.250-260, &#x27E8;10.1007/978-3-031-63227-3_17&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W2013326913","https://openalex.org/W2036058623","https://openalex.org/W2044525257","https://openalex.org/W2076513103","https://openalex.org/W2098023402","https://openalex.org/W2103017472","https://openalex.org/W2151393864","https://openalex.org/W2153011302","https://openalex.org/W2160095931","https://openalex.org/W2163296115","https://openalex.org/W2231865019","https://openalex.org/W2345356016","https://openalex.org/W2498761000","https://openalex.org/W2551194178","https://openalex.org/W2747545374","https://openalex.org/W2951446896","https://openalex.org/W2952535935","https://openalex.org/W3026309659","https://openalex.org/W3036077871","https://openalex.org/W3048888454","https://openalex.org/W3152493721","https://openalex.org/W4205108148","https://openalex.org/W4205973692","https://openalex.org/W4206715405","https://openalex.org/W4206908907","https://openalex.org/W4207067915","https://openalex.org/W4233698560","https://openalex.org/W4255299645","https://openalex.org/W4282919091","https://openalex.org/W4288075003"],"related_works":["https://openalex.org/W2950199998","https://openalex.org/W2560421304","https://openalex.org/W2951387065","https://openalex.org/W2134575910","https://openalex.org/W4385727351","https://openalex.org/W4306798985","https://openalex.org/W2130939068","https://openalex.org/W3163717165","https://openalex.org/W2114466827","https://openalex.org/W249159571"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
