{"id":"https://openalex.org/W4387420104","doi":"https://doi.org/10.1007/978-3-031-45350-2_11","title":"Modeling Barrett\u2019s Esophagus Progression Using Geometric Variational Autoencoders","display_name":"Modeling Barrett\u2019s Esophagus Progression Using Geometric Variational Autoencoders","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4387420104","doi":"https://doi.org/10.1007/978-3-031-45350-2_11"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-45350-2_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-45350-2_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pure.amsterdamumc.nl/ws/files/141511343/Modeling-barretts-esophagus-progression-using-geometric-variational-autoencoders.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044502317","display_name":"Vivien van Veldhuizen","orcid":null},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Vivien van Veldhuizen","raw_affiliation_strings":["University of Amsterdam, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022575807","display_name":"Sharvaree Vadgama","orcid":null},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sharvaree Vadgama","raw_affiliation_strings":["University of Amsterdam, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089675343","display_name":"Onno J. de Boer","orcid":"https://orcid.org/0000-0001-8844-1326"},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"funder","lineage":["https://openalex.org/I4210151833"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Onno de Boer","raw_affiliation_strings":["Amsterdam University Medical Centres, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Amsterdam University Medical Centres, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210151833"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030570166","display_name":"Sybren L. Meijer","orcid":"https://orcid.org/0000-0002-6953-2406"},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"funder","lineage":["https://openalex.org/I4210151833"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sybren Meijer","raw_affiliation_strings":["Amsterdam University Medical Centres, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Amsterdam University Medical Centres, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210151833"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000647841","display_name":"Erik J. Bekkers","orcid":"https://orcid.org/0000-0003-4418-2160"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Erik J. Bekkers","raw_affiliation_strings":["University of Amsterdam, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5044502317"],"corresponding_institution_ids":["https://openalex.org/I887064364"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.57268147,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"132","last_page":"142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10619","display_name":"Esophageal Cancer Research and Treatment","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10619","display_name":"Esophageal Cancer Research and Treatment","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10696","display_name":"Gastric Cancer Management and Outcomes","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11658","display_name":"Esophageal and GI Pathology","score":0.965499997138977,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.9508218169212341},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6806895732879639},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6718949675559998},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6338862180709839},{"id":"https://openalex.org/keywords/esophageal-adenocarcinoma","display_name":"Esophageal adenocarcinoma","score":0.5765901803970337},{"id":"https://openalex.org/keywords/esophagus","display_name":"Esophagus","score":0.5000286102294922},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.4735606908798218},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.4693399667739868},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46188443899154663},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.3739910125732422},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.368984192609787},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20203837752342224},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.20120695233345032},{"id":"https://openalex.org/keywords/adenocarcinoma","display_name":"Adenocarcinoma","score":0.19859474897384644},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10813543200492859}],"concepts":[{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.9508218169212341},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6806895732879639},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6718949675559998},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6338862180709839},{"id":"https://openalex.org/C2992824209","wikidata":"https://www.wikidata.org/wiki/Q372701","display_name":"Esophageal adenocarcinoma","level":4,"score":0.5765901803970337},{"id":"https://openalex.org/C2777819096","wikidata":"https://www.wikidata.org/wiki/Q173710","display_name":"Esophagus","level":2,"score":0.5000286102294922},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.4735606908798218},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.4693399667739868},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46188443899154663},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3739910125732422},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.368984192609787},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20203837752342224},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.20120695233345032},{"id":"https://openalex.org/C2781182431","wikidata":"https://www.wikidata.org/wiki/Q356033","display_name":"Adenocarcinoma","level":3,"score":0.19859474897384644},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10813543200492859},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-031-45350-2_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-45350-2_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:pure.amsterdamumc.nl:publications/1e5803cc-0329-4767-9fce-862c3abff476","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/1e5803cc-0329-4767-9fce-862c3abff476","pdf_url":"https://pure.amsterdamumc.nl/ws/files/141511343/Modeling-barretts-esophagus-progression-using-geometric-variational-autoencoders.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"van Veldhuizen, V, Vadgama, S, de Boer, O, Meijer, S & Bekkers, E J 2023, Modeling Barrett\u2019s Esophagus Progression Using Geometric Variational Autoencoders. in Cancer Prevention Through Early Detection - 2nd International Workshop, CaPTion 2023, Held in Conjunction with MICCAI 2023, Proceedings. vol. 14295 LNCS, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 14295 LNCS, Springer Science and Business Media Deutschland GmbH, pp. 132-142, 2nd International Workshop on Cancer Prevention through early detecTion, CaPTion 2023, Vancover, Canada, 12/10/2023. https://doi.org/10.1007/978-3-031-45350-2_11","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:oai:pure.amsterdamumc.nl:publications/1e5803cc-0329-4767-9fce-862c3abff476","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/1e5803cc-0329-4767-9fce-862c3abff476","pdf_url":"https://pure.amsterdamumc.nl/ws/files/141511343/Modeling-barretts-esophagus-progression-using-geometric-variational-autoencoders.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"van Veldhuizen, V, Vadgama, S, de Boer, O, Meijer, S & Bekkers, E J 2023, Modeling Barrett\u2019s Esophagus Progression Using Geometric Variational Autoencoders. in Cancer Prevention Through Early Detection - 2nd International Workshop, CaPTion 2023, Held in Conjunction with MICCAI 2023, Proceedings. vol. 14295 LNCS, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 14295 LNCS, Springer Science and Business Media Deutschland GmbH, pp. 132-142, 2nd International Workshop on Cancer Prevention through early detecTion, CaPTion 2023, Vancover, Canada, 12/10/2023. https://doi.org/10.1007/978-3-031-45350-2_11","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4387420104.pdf"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2513396876","https://openalex.org/W2794989069","https://openalex.org/W2963343946","https://openalex.org/W2964231450","https://openalex.org/W2980505231","https://openalex.org/W4229016815","https://openalex.org/W6606371196","https://openalex.org/W6836189640"],"related_works":["https://openalex.org/W2159052453","https://openalex.org/W3013693939","https://openalex.org/W2566616303","https://openalex.org/W3131327266","https://openalex.org/W4297051394","https://openalex.org/W2752972570","https://openalex.org/W2734887215","https://openalex.org/W2803255133","https://openalex.org/W2909431601","https://openalex.org/W2548664182"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-03-17T17:19:04.345684","created_date":"2025-10-10T00:00:00"}
