{"id":"https://openalex.org/W4382407548","doi":"https://doi.org/10.1007/978-3-031-34960-7_26","title":"Degree-Normalization Improves Random-Walk-Based Embedding Accuracy in\u00a0PPI Graphs","display_name":"Degree-Normalization Improves Random-Walk-Based Embedding Accuracy in\u00a0PPI Graphs","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4382407548","doi":"https://doi.org/10.1007/978-3-031-34960-7_26"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-34960-7_26","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-34960-7_26","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034969250","display_name":"Luca Cappelletti","orcid":"https://orcid.org/0000-0002-1269-2038"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Cappelletti","raw_affiliation_strings":["AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092353125","display_name":"Stefano Taverni","orcid":null},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Taverni","raw_affiliation_strings":["AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056607122","display_name":"Tommaso Fontana","orcid":"https://orcid.org/0000-0002-9806-3493"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tommaso Fontana","raw_affiliation_strings":["AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062038813","display_name":"Marcin P. Joachimiak","orcid":"https://orcid.org/0000-0001-8175-045X"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcin P. Joachimiak","raw_affiliation_strings":["Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073533486","display_name":"Justin Reese","orcid":"https://orcid.org/0000-0002-2170-2250"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Reese","raw_affiliation_strings":["Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033225381","display_name":"Peter N. Robinson","orcid":"https://orcid.org/0000-0002-0736-9199"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter Robinson","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine, Farmington, USA"],"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine, Farmington, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079939753","display_name":"Elena Casiraghi","orcid":"https://orcid.org/0000-0003-2024-7572"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210152452","display_name":"Consorzio Interuniversitario Nazionale per l'Informatica","ror":"https://ror.org/03v8v5y65","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210152452"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Elena Casiraghi","raw_affiliation_strings":["AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy","CINI, Infolife National Laboratory, Rome, Italy","Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"CINI, Infolife National Laboratory, Rome, Italy","institution_ids":["https://openalex.org/I4210152452"]},{"raw_affiliation_string":"Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071444502","display_name":"Giorgio Valentini","orcid":"https://orcid.org/0000-0002-5694-3919"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210145878","display_name":"STZ eyetrial","ror":"https://ror.org/049sttw47","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210145878"]},{"id":"https://openalex.org/I4210152452","display_name":"Consorzio Interuniversitario Nazionale per l'Informatica","ror":"https://ror.org/03v8v5y65","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210152452"]}],"countries":["DE","IT"],"is_corresponding":true,"raw_author_name":"Giorgio Valentini","raw_affiliation_strings":["AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy","CINI, Infolife National Laboratory, Rome, Italy","ELLIS, European Laboratory for Learning and Intelligent Systems, Tuebingen, Germany"],"affiliations":[{"raw_affiliation_string":"AnacletoLab, Department of Computer Science \u201cGiovanni degli Antoni\u201d, Universit\u00e1 degli Studi di Milano, 20133, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"CINI, Infolife National Laboratory, Rome, Italy","institution_ids":["https://openalex.org/I4210152452"]},{"raw_affiliation_string":"ELLIS, European Laboratory for Learning and Intelligent Systems, Tuebingen, Germany","institution_ids":["https://openalex.org/I4210145878"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5071444502"],"corresponding_institution_ids":["https://openalex.org/I189158943","https://openalex.org/I4210145878","https://openalex.org/I4210152452"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.6666,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.84157222,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"372","last_page":"383"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/degree","display_name":"Degree (music)","score":0.781510591506958},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.7402042746543884},{"id":"https://openalex.org/keywords/random-walk","display_name":"Random walk","score":0.7198388576507568},{"id":"https://openalex.org/keywords/graph-embedding","display_name":"Graph embedding","score":0.6538673639297485},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.635728120803833},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6350648403167725},{"id":"https://openalex.org/keywords/overfitting","display_name":"Overfitting","score":0.4785221815109253},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4612042307853699},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.43482452630996704},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3939652740955353},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38193339109420776},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.30255448818206787},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2801136374473572},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.11501973867416382},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08789211511611938}],"concepts":[{"id":"https://openalex.org/C2775997480","wikidata":"https://www.wikidata.org/wiki/Q586277","display_name":"Degree (music)","level":2,"score":0.781510591506958},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.7402042746543884},{"id":"https://openalex.org/C121194460","wikidata":"https://www.wikidata.org/wiki/Q856741","display_name":"Random walk","level":2,"score":0.7198388576507568},{"id":"https://openalex.org/C75564084","wikidata":"https://www.wikidata.org/wiki/Q5597085","display_name":"Graph embedding","level":3,"score":0.6538673639297485},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.635728120803833},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6350648403167725},{"id":"https://openalex.org/C22019652","wikidata":"https://www.wikidata.org/wiki/Q331309","display_name":"Overfitting","level":3,"score":0.4785221815109253},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4612042307853699},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.43482452630996704},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3939652740955353},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38193339109420776},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.30255448818206787},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2801136374473572},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.11501973867416382},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08789211511611938},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-34960-7_26","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-34960-7_26","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7200000286102295,"display_name":"Sustainable cities and communities","id":"https://metadata.un.org/sdg/11"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1780149461","https://openalex.org/W2003137566","https://openalex.org/W2154851992","https://openalex.org/W2962756421","https://openalex.org/W2963410212","https://openalex.org/W2977707586","https://openalex.org/W2999309192","https://openalex.org/W3027311123","https://openalex.org/W3104097132","https://openalex.org/W3107527779","https://openalex.org/W3198168376","https://openalex.org/W3206175178","https://openalex.org/W4233767847","https://openalex.org/W4307717106","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W1574414179","https://openalex.org/W4362597605","https://openalex.org/W3009056573","https://openalex.org/W2922073769","https://openalex.org/W4297676672","https://openalex.org/W4281702477","https://openalex.org/W4378510483","https://openalex.org/W4376166922","https://openalex.org/W2490526372","https://openalex.org/W4221142204"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
