{"id":"https://openalex.org/W4367147376","doi":"https://doi.org/10.1007/978-3-031-30923-6_7","title":"Using a\u00a0Graph Transformer Network to\u00a0Predict 3D Coordinates of\u00a0Proteins via\u00a0Geometric Algebra Modelling","display_name":"Using a\u00a0Graph Transformer Network to\u00a0Predict 3D Coordinates of\u00a0Proteins via\u00a0Geometric Algebra Modelling","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4367147376","doi":"https://doi.org/10.1007/978-3-031-30923-6_7"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-30923-6_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-30923-6_7","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064786541","display_name":"Alberto Pepe","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Alberto Pepe","raw_affiliation_strings":["Signal Processing and Communications Group, Cambridge University Engineering Department, Trumpington Street, Cambridge, CB2 1PZ, UK"],"raw_orcid":"https://orcid.org/0000-0001-8775-4427","affiliations":[{"raw_affiliation_string":"Signal Processing and Communications Group, Cambridge University Engineering Department, Trumpington Street, Cambridge, CB2 1PZ, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019616738","display_name":"Joan Lasenby","orcid":"https://orcid.org/0000-0002-0571-0218"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Joan Lasenby","raw_affiliation_strings":["Signal Processing and Communications Group, Cambridge University Engineering Department, Trumpington Street, Cambridge, CB2 1PZ, UK"],"raw_orcid":"https://orcid.org/0000-0002-0571-0218","affiliations":[{"raw_affiliation_string":"Signal Processing and Communications Group, Cambridge University Engineering Department, Trumpington Street, Cambridge, CB2 1PZ, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016204870","display_name":"Pablo Chac\u00f3n","orcid":"https://orcid.org/0000-0002-3168-4826"},"institutions":[{"id":"https://openalex.org/I4210147396","display_name":"Instituto de Qu\u00edmica F\u00edsica Blas Cabrera","ror":"https://ror.org/03xk60j79","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147396"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pablo Chac\u00f3n","raw_affiliation_strings":["Chacon Lab, Rocasolano Physical Chemistry Institute, 28006, Madrid, Spain"],"raw_orcid":"https://orcid.org/0000-0002-3168-4826","affiliations":[{"raw_affiliation_string":"Chacon Lab, Rocasolano Physical Chemistry Institute, 28006, Madrid, Spain","institution_ids":["https://openalex.org/I4210147396"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5064786541"],"corresponding_institution_ids":["https://openalex.org/I241749"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.1535,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.94688681,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"83","last_page":"95"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9642999768257141,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9484999775886536,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6681454181671143},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6643542051315308},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5684911608695984},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.4962785840034485},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4881459176540375},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4501122236251831},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3956015408039093}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6681454181671143},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6643542051315308},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5684911608695984},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.4962785840034485},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4881459176540375},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4501122236251831},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3956015408039093},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-30923-6_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-30923-6_7","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1595823061","https://openalex.org/W2117463337","https://openalex.org/W2305696339","https://openalex.org/W2620998958","https://openalex.org/W2902364122","https://openalex.org/W2903739847","https://openalex.org/W2979866130","https://openalex.org/W2981426306","https://openalex.org/W2997234557","https://openalex.org/W3000982932","https://openalex.org/W3048060386","https://openalex.org/W3160050461","https://openalex.org/W3165545667","https://openalex.org/W3166914545","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3205208140","https://openalex.org/W3207457994"],"related_works":["https://openalex.org/W266446692","https://openalex.org/W303980170","https://openalex.org/W2351491280","https://openalex.org/W2386767533","https://openalex.org/W3157910026","https://openalex.org/W2371447506","https://openalex.org/W2795913521","https://openalex.org/W2991626910","https://openalex.org/W2469743300","https://openalex.org/W2908128570"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1}],"updated_date":"2026-01-22T23:29:09.771500","created_date":"2025-10-10T00:00:00"}