{"id":"https://openalex.org/W4312387469","doi":"https://doi.org/10.1007/978-3-031-21689-3_16","title":"Protein Molecular Function Annotation Based on\u00a0Transformer Embeddings","display_name":"Protein Molecular Function Annotation Based on\u00a0Transformer Embeddings","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4312387469","doi":"https://doi.org/10.1007/978-3-031-21689-3_16"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-21689-3_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-21689-3_16","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065375346","display_name":"Gabriel Bianchin de Oliveira","orcid":"https://orcid.org/0000-0002-1238-4860"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Gabriel Bianchin de Oliveira","raw_affiliation_strings":["Institute of Computing, University of Campinas, Campinas, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065725754","display_name":"H\u00e9lio Pedrini","orcid":"https://orcid.org/0000-0003-0125-630X"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Helio Pedrini","raw_affiliation_strings":["Institute of Computing, University of Campinas, Campinas, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042140271","display_name":"Zanoni Dias","orcid":"https://orcid.org/0000-0003-3333-6822"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Zanoni Dias","raw_affiliation_strings":["Institute of Computing, University of Campinas, Campinas, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I181391015"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065375346"],"corresponding_institution_ids":["https://openalex.org/I181391015"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.36483326,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"210","last_page":"220"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7313562035560608},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5910809636116028},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.5220315456390381},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5141473412513733},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4908216893672943},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47127410769462585},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3542526364326477},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3490443825721741},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15862900018692017},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12377411127090454},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.0633806586265564}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7313562035560608},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5910809636116028},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.5220315456390381},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5141473412513733},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4908216893672943},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47127410769462585},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3542526364326477},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3490443825721741},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15862900018692017},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12377411127090454},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0633806586265564},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-21689-3_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-21689-3_16","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.5699999928474426}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1144107824","https://openalex.org/W2064820767","https://openalex.org/W2076834744","https://openalex.org/W2103017472","https://openalex.org/W2117235735","https://openalex.org/W2158714788","https://openalex.org/W2615066396","https://openalex.org/W2775231772","https://openalex.org/W2911489562","https://openalex.org/W2935275081","https://openalex.org/W2980298350","https://openalex.org/W2989608901","https://openalex.org/W3014623641","https://openalex.org/W3082096568","https://openalex.org/W3129125493","https://openalex.org/W3137270128","https://openalex.org/W3143063265","https://openalex.org/W3177500196","https://openalex.org/W3194145003","https://openalex.org/W3216643143","https://openalex.org/W4206625736","https://openalex.org/W4226236758","https://openalex.org/W4236358448","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W2165797737","https://openalex.org/W1990403339","https://openalex.org/W4319917046","https://openalex.org/W2110115297","https://openalex.org/W2116930553","https://openalex.org/W1975589113","https://openalex.org/W4283824180","https://openalex.org/W1846544459","https://openalex.org/W1966852334","https://openalex.org/W2153245720"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
