{"id":"https://openalex.org/W4313118586","doi":"https://doi.org/10.1007/978-3-031-21395-3_9","title":"TopKmer: Parallel High Frequency K-mer Counting on\u00a0Distributed Memory","display_name":"TopKmer: Parallel High Frequency K-mer Counting on\u00a0Distributed Memory","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4313118586","doi":"https://doi.org/10.1007/978-3-031-21395-3_9"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-21395-3_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-21395-3_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091485940","display_name":"Li Mocheng","orcid":"https://orcid.org/0000-0002-5524-1042"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Mocheng","raw_affiliation_strings":["Institute for Quantum Information and State Key Laboratory of High Performance Computing, College of Computer, National University of Defense Technology, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Institute for Quantum Information and State Key Laboratory of High Performance Computing, College of Computer, National University of Defense Technology, Changsha, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101483479","display_name":"Zhiguang Chen","orcid":"https://orcid.org/0000-0002-9318-5715"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Zhiguang","raw_affiliation_strings":["School of Computer, Sun Yat-sen University, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Computer, Sun Yat-sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023506057","display_name":"Nong Xiao","orcid":"https://orcid.org/0000-0002-2166-977X"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Nong","raw_affiliation_strings":["Institute for Quantum Information and State Key Laboratory of High Performance Computing, College of Computer, National University of Defense Technology, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Institute for Quantum Information and State Key Laboratory of High Performance Computing, College of Computer, National University of Defense Technology, Changsha, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103097085","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0003-1833-1708"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liu Yang","raw_affiliation_strings":["Institute for Quantum Information and State Key Laboratory of High Performance Computing, College of Computer, National University of Defense Technology, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Institute for Quantum Information and State Key Laboratory of High Performance Computing, College of Computer, National University of Defense Technology, Changsha, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103652314","display_name":"Luo Xi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Luo Xi","raw_affiliation_strings":["Automotive Department, Shenzhen No. 2 Vocational and Technical School, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Automotive Department, Shenzhen No. 2 Vocational and Technical School, Shenzhen, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100357767","display_name":"\u0422\u0430\u043e \u0427\u0435\u043d","orcid":"https://orcid.org/0000-0002-8031-7117"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chen Tao","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China","institution_ids":["https://openalex.org/I4210149540"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100357767"],"corresponding_institution_ids":["https://openalex.org/I4210149540"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.38616826,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"96","last_page":"107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11478","display_name":"Caching and Content Delivery","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8243723511695862},{"id":"https://openalex.org/keywords/terabyte","display_name":"Terabyte","score":0.8093724250793457},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.7077318429946899},{"id":"https://openalex.org/keywords/memory-footprint","display_name":"Memory footprint","score":0.6801522970199585},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5380896925926208},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5238859057426453},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5067601799964905},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.49854540824890137},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.4647698998451233},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34569090604782104},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.327146053314209},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20054420828819275},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.15057983994483948},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.09154698252677917},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.07871565222740173}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8243723511695862},{"id":"https://openalex.org/C199683683","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Terabyte","level":2,"score":0.8093724250793457},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.7077318429946899},{"id":"https://openalex.org/C74912251","wikidata":"https://www.wikidata.org/wiki/Q6815727","display_name":"Memory footprint","level":2,"score":0.6801522970199585},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5380896925926208},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5238859057426453},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5067601799964905},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.49854540824890137},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.4647698998451233},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34569090604782104},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.327146053314209},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20054420828819275},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.15057983994483948},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.09154698252677917},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.07871565222740173},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-21395-3_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-21395-3_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W139562302","https://openalex.org/W1982092405","https://openalex.org/W2005202728","https://openalex.org/W2006355640","https://openalex.org/W2033292629","https://openalex.org/W2080234606","https://openalex.org/W2096128575","https://openalex.org/W2111071896","https://openalex.org/W2115546424","https://openalex.org/W2118893542","https://openalex.org/W2156632255","https://openalex.org/W2163584430","https://openalex.org/W2303656007","https://openalex.org/W2761301729","https://openalex.org/W2902483623","https://openalex.org/W2987144986","https://openalex.org/W4249843299","https://openalex.org/W4250854929"],"related_works":["https://openalex.org/W2018090346","https://openalex.org/W4388843294","https://openalex.org/W3209961408","https://openalex.org/W4313118586","https://openalex.org/W4229373851","https://openalex.org/W3009214133","https://openalex.org/W4200469041","https://openalex.org/W2006192792","https://openalex.org/W2010713719","https://openalex.org/W2053421025"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
