{"id":"https://openalex.org/W4312679951","doi":"https://doi.org/10.1007/978-3-031-17849-8_22","title":"Learned Indexing in\u00a0Proteins: Substituting Complex Distance Calculations with\u00a0Embedding and\u00a0Clustering Techniques","display_name":"Learned Indexing in\u00a0Proteins: Substituting Complex Distance Calculations with\u00a0Embedding and\u00a0Clustering Techniques","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4312679951","doi":"https://doi.org/10.1007/978-3-031-17849-8_22"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-17849-8_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-17849-8_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005015118","display_name":"Jaroslav O\u013eha","orcid":"https://orcid.org/0000-0003-1824-468X"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Jaroslav Olha","raw_affiliation_strings":["Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0003-1824-468X","affiliations":[{"raw_affiliation_string":"Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067283214","display_name":"Ter\u00e9zia Slanin\u00e1kov\u00e1","orcid":"https://orcid.org/0000-0003-0502-1145"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ter\u00e9zia Slanin\u00e1kov\u00e1","raw_affiliation_strings":["Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0003-0502-1145","affiliations":[{"raw_affiliation_string":"Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082009192","display_name":"Martin Gendiar","orcid":null},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Martin Gendiar","raw_affiliation_strings":["Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034266620","display_name":"Matej Antol","orcid":"https://orcid.org/0000-0002-1380-5647"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Matej Antol","raw_affiliation_strings":["Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-1380-5647","affiliations":[{"raw_affiliation_string":"Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027772886","display_name":"Vlastislav Dohnal","orcid":"https://orcid.org/0000-0001-7768-7435"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Vlastislav Dohnal","raw_affiliation_strings":["Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0001-7768-7435","affiliations":[{"raw_affiliation_string":"Faculty of Informatics and Institute of Computer Science, Masaryk University, Botanick\u00e1 68a, 602 00, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5005015118"],"corresponding_institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.9996,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.88031387,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"274","last_page":"282"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.7666893005371094},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6563451290130615},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6491428017616272},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.5489634871482849},{"id":"https://openalex.org/keywords/nearest-neighbor-search","display_name":"Nearest neighbor search","score":0.5469997525215149},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.5372028350830078},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5337086319923401},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5198686122894287},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.47567787766456604},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.45515650510787964},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.4530770480632782},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.44416093826293945},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3644633889198303},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34734708070755005},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27238768339157104}],"concepts":[{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.7666893005371094},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6563451290130615},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6491428017616272},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.5489634871482849},{"id":"https://openalex.org/C116738811","wikidata":"https://www.wikidata.org/wiki/Q608751","display_name":"Nearest neighbor search","level":2,"score":0.5469997525215149},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.5372028350830078},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5337086319923401},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5198686122894287},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.47567787766456604},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.45515650510787964},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.4530770480632782},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.44416093826293945},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3644633889198303},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34734708070755005},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27238768339157104},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-17849-8_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-17849-8_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W2033354942","https://openalex.org/W2144998676","https://openalex.org/W2962771342","https://openalex.org/W2967734741","https://openalex.org/W3104537585","https://openalex.org/W3155998290","https://openalex.org/W3177828909","https://openalex.org/W3208139355","https://openalex.org/W3209898743","https://openalex.org/W3210249246","https://openalex.org/W4295789422"],"related_works":["https://openalex.org/W1909208367","https://openalex.org/W1949910768","https://openalex.org/W1480566255","https://openalex.org/W190832529","https://openalex.org/W2254397067","https://openalex.org/W2013685631","https://openalex.org/W4382241270","https://openalex.org/W4382242230","https://openalex.org/W4385693254","https://openalex.org/W1610355325"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-25T08:17:42.794288","created_date":"2025-10-10T00:00:00"}
