{"id":"https://openalex.org/W4291302237","doi":"https://doi.org/10.1007/978-3-031-13870-6_65","title":"Using Deep Learning to Predict Transcription Factor Binding Sites Based on Multiple-omics Data","display_name":"Using Deep Learning to Predict Transcription Factor Binding Sites Based on Multiple-omics Data","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4291302237","doi":"https://doi.org/10.1007/978-3-031-13870-6_65"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-13870-6_65","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-13870-6_65","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070692070","display_name":"Youhong Xu","orcid":"https://orcid.org/0000-0003-0085-8202"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Youhong Xu","raw_affiliation_strings":["Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, 201804, China"],"affiliations":[{"raw_affiliation_string":"Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, 201804, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007724310","display_name":"Changan Yuan","orcid":"https://orcid.org/0000-0001-6912-718X"},"institutions":[{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changan Yuan","raw_affiliation_strings":["Guangxi Academy of Science, Nanning, 530007, China","Guangxi Key Lab of Human-Machine Interaction and Intelligent Decision, Guangxi Academy Sciences, Nanning, 530001, China"],"affiliations":[{"raw_affiliation_string":"Guangxi Academy of Science, Nanning, 530007, China","institution_ids":["https://openalex.org/I4210165264"]},{"raw_affiliation_string":"Guangxi Key Lab of Human-Machine Interaction and Intelligent Decision, Guangxi Academy Sciences, Nanning, 530001, China","institution_ids":["https://openalex.org/I4210165264"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076525932","display_name":"Hongjie Wu","orcid":"https://orcid.org/0000-0001-5921-8707"},"institutions":[{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongjie Wu","raw_affiliation_strings":["School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China"],"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China","institution_ids":["https://openalex.org/I308837"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049435754","display_name":"Xing\u2010Ming Zhao","orcid":"https://orcid.org/0000-0002-4531-3970"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]},{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingming Zhao","raw_affiliation_strings":["Institute of Science and Technology for Brain Inspired Intelligence (ISTBI), Fudan University, Shanghai, 200433, China"],"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain Inspired Intelligence (ISTBI), Fudan University, Shanghai, 200433, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5070692070"],"corresponding_institution_ids":["https://openalex.org/I116953780"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22607189,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"799","last_page":"810"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6123934388160706},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.5675708055496216},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5177306532859802},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.511875331401825},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3633243143558502},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3483262062072754},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2726519703865051},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24398019909858704},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19904345273971558},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1647670865058899},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.14602765440940857}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6123934388160706},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.5675708055496216},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5177306532859802},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.511875331401825},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3633243143558502},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3483262062072754},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2726519703865051},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24398019909858704},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19904345273971558},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1647670865058899},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.14602765440940857}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-13870-6_65","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-13870-6_65","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1980825481","https://openalex.org/W1988581590","https://openalex.org/W1990893875","https://openalex.org/W2005129098","https://openalex.org/W2046740230","https://openalex.org/W2087342608","https://openalex.org/W2154855927","https://openalex.org/W2159324718","https://openalex.org/W2198606573","https://openalex.org/W2200765899","https://openalex.org/W2330303612","https://openalex.org/W2460762678","https://openalex.org/W2479945688","https://openalex.org/W2604947511","https://openalex.org/W2757038198","https://openalex.org/W2789652838","https://openalex.org/W2885815722","https://openalex.org/W2896262061","https://openalex.org/W2909854604","https://openalex.org/W2942090527","https://openalex.org/W2949275670","https://openalex.org/W2963601856","https://openalex.org/W2964758100","https://openalex.org/W2976217562","https://openalex.org/W2980975636","https://openalex.org/W3041434156","https://openalex.org/W3119364326","https://openalex.org/W3133705608","https://openalex.org/W3202837734","https://openalex.org/W4253785452"],"related_works":["https://openalex.org/W2347219288","https://openalex.org/W2366221835","https://openalex.org/W2011242364","https://openalex.org/W2809112422","https://openalex.org/W2105971796","https://openalex.org/W2162836426","https://openalex.org/W2017800392","https://openalex.org/W2151821895","https://openalex.org/W2111977160","https://openalex.org/W2567895710"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
