{"id":"https://openalex.org/W4285152218","doi":"https://doi.org/10.1007/978-3-031-06220-9_9","title":"Quantifying Hierarchical Conflicts in\u00a0Homology Statements","display_name":"Quantifying Hierarchical Conflicts in\u00a0Homology Statements","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4285152218","doi":"https://doi.org/10.1007/978-3-031-06220-9_9"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-06220-9_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-06220-9_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-03875727","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014999428","display_name":"Krister M. Swenson","orcid":"https://orcid.org/0000-0001-8690-1261"},"institutions":[{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Krister M. Swenson","raw_affiliation_strings":["Centre National de la Recherche Scientifique (CNRS), Paris, France","LIRMM, University of Montpellier, Montpellier, France"],"affiliations":[{"raw_affiliation_string":"Centre National de la Recherche Scientifique (CNRS), Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LIRMM, University of Montpellier, Montpellier, France","institution_ids":["https://openalex.org/I4210101743","https://openalex.org/I19894307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025159794","display_name":"Afif Elghraoui","orcid":"https://orcid.org/0000-0002-6489-9444"},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Afif Elghraoui","raw_affiliation_strings":["Department of Electrical and Computer Engineering, San Diego State University, San Diego, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, San Diego State University, San Diego, CA, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042304681","display_name":"Faramarz Valafar","orcid":"https://orcid.org/0000-0002-3648-9384"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Faramarz Valafar","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of California, San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of California, San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087959579","display_name":"Siavash Mirarab","orcid":"https://orcid.org/0000-0001-5410-1518"},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siavash Mirarab","raw_affiliation_strings":["School of Public Health, San Diego State University, San Diego, CA, USA"],"affiliations":[{"raw_affiliation_string":"School of Public Health, San Diego State University, San Diego, CA, USA","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030931327","display_name":"Mathias Weller","orcid":"https://orcid.org/0000-0002-9653-3690"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210154111","display_name":"Universit\u00e9 Gustave Eiffel","ror":"https://ror.org/03x42jk29","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154111"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mathias Weller","raw_affiliation_strings":["Centre National de la Recherche Scientifique (CNRS), Paris, France","LIGM, Universit\u00e9 Gustave Eiffel, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre National de la Recherche Scientifique (CNRS), Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LIGM, Universit\u00e9 Gustave Eiffel, Paris, France","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I4210154111"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5014999428"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210088322","https://openalex.org/I4210101743"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15175401,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"146","last_page":"167"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.6983676552772522},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5868147015571594},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.5783765316009521},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5688780546188354},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.562491238117218},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.4466962218284607},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44417884945869446},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42430856823921204},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.42404836416244507},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4117579460144043},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3895483613014221},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3574464023113251},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2851203680038452},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28255218267440796},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2211819291114807},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10735052824020386}],"concepts":[{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.6983676552772522},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5868147015571594},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.5783765316009521},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5688780546188354},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.562491238117218},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.4466962218284607},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44417884945869446},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42430856823921204},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.42404836416244507},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4117579460144043},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3895483613014221},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3574464023113251},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2851203680038452},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28255218267440796},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2211819291114807},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10735052824020386}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-031-06220-9_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-06220-9_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:hal-03875727v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03875727","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://recombcg2022.usask.ca/","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-03875727v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03875727","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://recombcg2022.usask.ca/","raw_type":"Conference papers"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1771668628","https://openalex.org/W1968950817","https://openalex.org/W1985530443","https://openalex.org/W1986009232","https://openalex.org/W1995725694","https://openalex.org/W1999341643","https://openalex.org/W2028696249","https://openalex.org/W2041257508","https://openalex.org/W2098816661","https://openalex.org/W2101969356","https://openalex.org/W2108497208","https://openalex.org/W2112132489","https://openalex.org/W2115918447","https://openalex.org/W2126423997","https://openalex.org/W2127639177","https://openalex.org/W2141274012","https://openalex.org/W2151464048","https://openalex.org/W2164786886","https://openalex.org/W2165686834","https://openalex.org/W2171231095","https://openalex.org/W2316262244","https://openalex.org/W2527473185","https://openalex.org/W2950150251","https://openalex.org/W2952386282","https://openalex.org/W2953989541","https://openalex.org/W2962226349","https://openalex.org/W3042408110","https://openalex.org/W3093976573","https://openalex.org/W3100651612","https://openalex.org/W3111607156","https://openalex.org/W4213305707"],"related_works":["https://openalex.org/W2626545547","https://openalex.org/W1996995514","https://openalex.org/W2571897395","https://openalex.org/W2952105401","https://openalex.org/W4375955900","https://openalex.org/W2566862871","https://openalex.org/W2097001759","https://openalex.org/W4315750474","https://openalex.org/W4254915624","https://openalex.org/W2088015737"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
