{"id":"https://openalex.org/W4285180474","doi":"https://doi.org/10.1007/978-3-031-06220-9_5","title":"Phylogenetic Placement Problem: A Hyperbolic Embedding Approach","display_name":"Phylogenetic Placement Problem: A Hyperbolic Embedding Approach","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4285180474","doi":"https://doi.org/10.1007/978-3-031-06220-9_5"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-06220-9_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-06220-9_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030824535","display_name":"Yueyu Jiang","orcid":"https://orcid.org/0000-0001-8425-7556"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yueyu Jiang","raw_affiliation_strings":["Electrical and Computer Engineering, University of California, San Diego, 95032, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of California, San Diego, 95032, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023308641","display_name":"Puoya Tabaghi","orcid":"https://orcid.org/0000-0002-1914-5950"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Puoya Tabaghi","raw_affiliation_strings":["Electrical and Computer Engineering, University of California, San Diego, 95032, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of California, San Diego, 95032, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087959579","display_name":"Siavash Mirarab","orcid":"https://orcid.org/0000-0001-5410-1518"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siavash Mirarab","raw_affiliation_strings":["Electrical and Computer Engineering, University of California, San Diego, 95032, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of California, San Diego, 95032, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030824535"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.4982,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58744045,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"68","last_page":"85"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.7337504625320435},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6157020330429077},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5938344597816467},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.5923089981079102},{"id":"https://openalex.org/keywords/distortion","display_name":"Distortion (music)","score":0.5900273323059082},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5152933597564697},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.4925177991390228},{"id":"https://openalex.org/keywords/euclidean-space","display_name":"Euclidean space","score":0.48765361309051514},{"id":"https://openalex.org/keywords/metric-space","display_name":"Metric space","score":0.47413086891174316},{"id":"https://openalex.org/keywords/euclidean-geometry","display_name":"Euclidean geometry","score":0.46556806564331055},{"id":"https://openalex.org/keywords/hyperbolic-space","display_name":"Hyperbolic space","score":0.45341333746910095},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35207343101501465},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3427930176258087},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3303636312484741},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.30788370966911316},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.23147711157798767},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.1921308934688568},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.08595740795135498},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08524149656295776}],"concepts":[{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.7337504625320435},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6157020330429077},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5938344597816467},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.5923089981079102},{"id":"https://openalex.org/C126780896","wikidata":"https://www.wikidata.org/wiki/Q899871","display_name":"Distortion (music)","level":4,"score":0.5900273323059082},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5152933597564697},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.4925177991390228},{"id":"https://openalex.org/C186450821","wikidata":"https://www.wikidata.org/wiki/Q17295","display_name":"Euclidean space","level":2,"score":0.48765361309051514},{"id":"https://openalex.org/C198043062","wikidata":"https://www.wikidata.org/wiki/Q180953","display_name":"Metric space","level":2,"score":0.47413086891174316},{"id":"https://openalex.org/C129782007","wikidata":"https://www.wikidata.org/wiki/Q162886","display_name":"Euclidean geometry","level":2,"score":0.46556806564331055},{"id":"https://openalex.org/C83677898","wikidata":"https://www.wikidata.org/wiki/Q1878538","display_name":"Hyperbolic space","level":2,"score":0.45341333746910095},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35207343101501465},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3427930176258087},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3303636312484741},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.30788370966911316},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.23147711157798767},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.1921308934688568},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.08595740795135498},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08524149656295776},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C194257627","wikidata":"https://www.wikidata.org/wiki/Q211554","display_name":"Amplifier","level":3,"score":0.0},{"id":"https://openalex.org/C2776257435","wikidata":"https://www.wikidata.org/wiki/Q1576430","display_name":"Bandwidth (computing)","level":2,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-06220-9_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-06220-9_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1596078534","https://openalex.org/W1748508858","https://openalex.org/W1889423108","https://openalex.org/W2038876634","https://openalex.org/W2041076979","https://openalex.org/W2045843097","https://openalex.org/W2060425093","https://openalex.org/W2103412835","https://openalex.org/W2139478957","https://openalex.org/W2161973008","https://openalex.org/W2176446742","https://openalex.org/W2199357291","https://openalex.org/W2280169270","https://openalex.org/W2889019390","https://openalex.org/W2975848703","https://openalex.org/W2990925943","https://openalex.org/W3080334945","https://openalex.org/W3126123524","https://openalex.org/W3142481250","https://openalex.org/W3205793393","https://openalex.org/W4210681352","https://openalex.org/W6732863005"],"related_works":["https://openalex.org/W2781495912","https://openalex.org/W2023081456","https://openalex.org/W4294294347","https://openalex.org/W2279239548","https://openalex.org/W115379796","https://openalex.org/W1965038885","https://openalex.org/W63976795","https://openalex.org/W2404658402","https://openalex.org/W2610298398","https://openalex.org/W4281992692"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
