{"id":"https://openalex.org/W4225793118","doi":"https://doi.org/10.1007/978-3-030-98876-0_5","title":"An Ontology to Structure Biological Data: The Contribution of Mathematical Models","display_name":"An Ontology to Structure Biological Data: The Contribution of Mathematical Models","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4225793118","doi":"https://doi.org/10.1007/978-3-030-98876-0_5"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-98876-0_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-98876-0_5","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-03950707","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059563571","display_name":"Olivier Inizan","orcid":"https://orcid.org/0000-0002-1137-5794"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Olivier Inizan","raw_affiliation_strings":["Universit\u00e9 Paris Saclay, INRAE, MaIAGE, Jouy-en-Josas, France"],"raw_orcid":"https://orcid.org/0000-0002-1137-5794","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Saclay, INRAE, MaIAGE, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026415146","display_name":"Vincent Fromion","orcid":"https://orcid.org/0000-0002-9194-5426"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Fromion","raw_affiliation_strings":["Universit\u00e9 Paris Saclay, INRAE, MaIAGE, Jouy-en-Josas, France"],"raw_orcid":"https://orcid.org/0000-0002-9194-5426","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Saclay, INRAE, MaIAGE, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080851047","display_name":"Anne Goelzer","orcid":"https://orcid.org/0000-0003-2222-6142"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne Goelzer","raw_affiliation_strings":["Universit\u00e9 Paris Saclay, INRAE, MaIAGE, Jouy-en-Josas, France"],"raw_orcid":"https://orcid.org/0000-0003-2222-6142","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Saclay, INRAE, MaIAGE, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082193370","display_name":"Fatiha Sa\u00efs","orcid":"https://orcid.org/0000-0002-6995-2785"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4387152856","display_name":"Laboratoire Interdisciplinaire des Sciences du Num\u00e9rique","ror":"https://ror.org/00rd81916","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4387152856"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fatiha Sa\u00efs","raw_affiliation_strings":["LISN, Universit\u00e9 Paris Saclay, CNRS UMR9015, Orsay, France"],"raw_orcid":"https://orcid.org/0000-0002-6995-2785","affiliations":[{"raw_affiliation_string":"LISN, Universit\u00e9 Paris Saclay, CNRS UMR9015, Orsay, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4387152856"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062889661","display_name":"Danai Symeonidou","orcid":"https://orcid.org/0000-0003-1152-5200"},"institutions":[{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210117045","display_name":"Math\u00e9matiques, Informatique et Statistique pour l'Environnement et l'Agronomie","ror":"https://ror.org/01pd2sz18","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210117045","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Danai Symeonidou","raw_affiliation_strings":["INRAE, SupAgro, UMR MISTEA, Universit\u00e9 de Montpellier, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0003-1152-5200","affiliations":[{"raw_affiliation_string":"INRAE, SupAgro, UMR MISTEA, Universit\u00e9 de Montpellier, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117045"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5059563571"],"corresponding_institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210088668"],"apc_list":null,"apc_paid":null,"fwci":3.1833,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.90490757,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"57","last_page":"64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8240756988525391},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7199513912200928},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6618733406066895},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6215781569480896},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6170685291290283},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5725248456001282},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5427356958389282},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4857209324836731},{"id":"https://openalex.org/keywords/diversity","display_name":"Diversity (politics)","score":0.46157822012901306},{"id":"https://openalex.org/keywords/biological-organism","display_name":"Biological organism","score":0.4439902603626251},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.4181763827800751},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.32509881258010864},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20983156561851501},{"id":"https://openalex.org/keywords/biological-materials","display_name":"Biological materials","score":0.18072164058685303},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.1766209900379181},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12465354800224304},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11815515160560608},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0888211727142334},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08776354789733887},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.08159452676773071},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.07016819715499878}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8240756988525391},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7199513912200928},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6618733406066895},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6215781569480896},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6170685291290283},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5725248456001282},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5427356958389282},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4857209324836731},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.46157822012901306},{"id":"https://openalex.org/C2992918937","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Biological organism","level":3,"score":0.4439902603626251},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.4181763827800751},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.32509881258010864},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20983156561851501},{"id":"https://openalex.org/C2984787389","wikidata":"https://www.wikidata.org/wiki/Q4915000","display_name":"Biological materials","level":2,"score":0.18072164058685303},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.1766209900379181},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12465354800224304},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11815515160560608},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0888211727142334},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08776354789733887},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.08159452676773071},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.07016819715499878},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-030-98876-0_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-98876-0_5","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:hal-03950707v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03950707","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://eventos.ucm.es/75359/detail/mtsr-2021-15th-international-conference-on-metadata-and-semantics-research.html","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:HAL:hal-04695320v1","is_oa":false,"landing_page_url":"https://hal.science/hal-04695320","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Metadata and Semantic Research, 2022, Bolzano, Italy. pp.57-64, &#x27E8;10.1007/978-3-030-98876-0_5&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-03950707v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03950707","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://eventos.ucm.es/75359/detail/mtsr-2021-15th-international-conference-on-metadata-and-semantics-research.html","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1510585142","https://openalex.org/W1577822803","https://openalex.org/W1644749979","https://openalex.org/W1799738555","https://openalex.org/W1969709265","https://openalex.org/W2081781433","https://openalex.org/W2094397891","https://openalex.org/W2150908245","https://openalex.org/W2770944789","https://openalex.org/W2897346149","https://openalex.org/W2924366642","https://openalex.org/W2950595506","https://openalex.org/W3020858853","https://openalex.org/W3044820918","https://openalex.org/W7009171728"],"related_works":["https://openalex.org/W2073808674","https://openalex.org/W2258998699","https://openalex.org/W4381594450","https://openalex.org/W2093544117","https://openalex.org/W2323455292","https://openalex.org/W2388933751","https://openalex.org/W1996828925","https://openalex.org/W2045726866","https://openalex.org/W4233069583","https://openalex.org/W2373431779"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
