{"id":"https://openalex.org/W3215959581","doi":"https://doi.org/10.1007/978-3-030-91825-5_13","title":"Analysis of Single Bacterium Dynamics in\u00a0a Stochastic Model of Toxin-Producing Bacteria","display_name":"Analysis of Single Bacterium Dynamics in\u00a0a Stochastic Model of Toxin-Producing Bacteria","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3215959581","doi":"https://doi.org/10.1007/978-3-030-91825-5_13","mag":"3215959581"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-91825-5_13","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-030-91825-5_13","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-030-91825-5_13.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-030-91825-5_13.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011539561","display_name":"Jamie Paterson","orcid":null},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jamie Paterson","raw_affiliation_strings":["School of Mathematics, University of Leeds, Leeds, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, University of Leeds, Leeds, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087520236","display_name":"Mart\u00edn L\u00f3pez\u2010Garc\u00eda","orcid":"https://orcid.org/0000-0003-3833-8595"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mart\u00edn L\u00f3pez-Garc\u00eda","raw_affiliation_strings":["School of Mathematics, University of Leeds, Leeds, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, University of Leeds, Leeds, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063867972","display_name":"Joseph J. Gillard","orcid":"https://orcid.org/0000-0001-7486-8927"},"institutions":[{"id":"https://openalex.org/I1339065421","display_name":"Defence Science and Technology Laboratory","ror":"https://ror.org/04jswqb94","country_code":"GB","type":"government","lineage":["https://openalex.org/I1306956679","https://openalex.org/I1339065421","https://openalex.org/I2802373619"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Joseph Gillard","raw_affiliation_strings":["CBR Division, Defence Science and Technology Laboratory, Salisbury, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CBR Division, Defence Science and Technology Laboratory, Salisbury, UK","institution_ids":["https://openalex.org/I1339065421"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086488685","display_name":"Thomas R. Laws","orcid":"https://orcid.org/0000-0002-0142-9162"},"institutions":[{"id":"https://openalex.org/I1339065421","display_name":"Defence Science and Technology Laboratory","ror":"https://ror.org/04jswqb94","country_code":"GB","type":"government","lineage":["https://openalex.org/I1306956679","https://openalex.org/I1339065421","https://openalex.org/I2802373619"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas R. Laws","raw_affiliation_strings":["CBR Division, Defence Science and Technology Laboratory, Salisbury, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CBR Division, Defence Science and Technology Laboratory, Salisbury, UK","institution_ids":["https://openalex.org/I1339065421"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022689831","display_name":"Grant Lythe","orcid":"https://orcid.org/0000-0001-7966-5571"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Grant Lythe","raw_affiliation_strings":["School of Mathematics, University of Leeds, Leeds, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, University of Leeds, Leeds, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053760589","display_name":"Carmen Molina-Par\u0131\u0301s","orcid":"https://orcid.org/0000-0001-9828-6737"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]},{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Carmen Molina-Par\u00eds","raw_affiliation_strings":["School of Mathematics, University of Leeds, Leeds, UK","T-6 Theoretical Biology and Biophysics, Theoretical Division, Los Alamos National Laboratory, Los Alamos, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, University of Leeds, Leeds, UK","institution_ids":["https://openalex.org/I130828816"]},{"raw_affiliation_string":"T-6 Theoretical Biology and Biophysics, Theoretical Division, Los Alamos National Laboratory, Los Alamos, USA","institution_ids":["https://openalex.org/I1343871089"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":{"value":5000,"currency":"EUR","value_usd":5392},"fwci":0.5429,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.67686709,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":null,"issue":null,"first_page":"210","last_page":"225"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11515","display_name":"Bacillus and Francisella bacterial research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11515","display_name":"Bacillus and Francisella bacterial research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.8600872159004211},{"id":"https://openalex.org/keywords/bacillus-anthracis","display_name":"Bacillus anthracis","score":0.6396452188491821},{"id":"https://openalex.org/keywords/toxin","display_name":"Toxin","score":0.6321027278900146},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.4770347774028778},{"id":"https://openalex.org/keywords/strain","display_name":"Strain (injury)","score":0.4135185480117798},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41343390941619873},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3392767012119293},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33307260274887085},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17848849296569824}],"concepts":[{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.8600872159004211},{"id":"https://openalex.org/C2780239966","wikidata":"https://www.wikidata.org/wiki/Q614156","display_name":"Bacillus anthracis","level":3,"score":0.6396452188491821},{"id":"https://openalex.org/C2777367657","wikidata":"https://www.wikidata.org/wiki/Q184651","display_name":"Toxin","level":2,"score":0.6321027278900146},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.4770347774028778},{"id":"https://openalex.org/C2778022156","wikidata":"https://www.wikidata.org/wiki/Q576145","display_name":"Strain (injury)","level":2,"score":0.4135185480117798},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41343390941619873},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3392767012119293},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33307260274887085},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17848849296569824},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-030-91825-5_13","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-030-91825-5_13","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-030-91825-5_13.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:eprints.whiterose.ac.uk:177687","is_oa":false,"landing_page_url":"https://orcid.org/0000-0003-3833-8595>,","pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Proceedings Paper"}],"best_oa_location":{"id":"doi:10.1007/978-3-030-91825-5_13","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-030-91825-5_13","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-030-91825-5_13.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G2253325380","display_name":"A Decision - Support Modelling Toolset for Anthrax Infection and Treatment","funder_award_id":"2274495","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332972","display_name":"Defence Science and Technology Laboratory","ror":"https://ror.org/04jswqb94"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320335334","display_name":"Defence Science and Technology Group","ror":null},{"id":"https://openalex.org/F4320338304","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3215959581.pdf","grobid_xml":"https://content.openalex.org/works/W3215959581.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W370471672","https://openalex.org/W1537236879","https://openalex.org/W1681552875","https://openalex.org/W1968977589","https://openalex.org/W1975648878","https://openalex.org/W1976831998","https://openalex.org/W1978182054","https://openalex.org/W2015148410","https://openalex.org/W2016338405","https://openalex.org/W2027168511","https://openalex.org/W2050926548","https://openalex.org/W2072057320","https://openalex.org/W2102649152","https://openalex.org/W2154438716","https://openalex.org/W2155418451","https://openalex.org/W2276480031","https://openalex.org/W2322737164","https://openalex.org/W2467233234","https://openalex.org/W2525577263","https://openalex.org/W2820032278","https://openalex.org/W2884225363","https://openalex.org/W2890672291","https://openalex.org/W2894579636","https://openalex.org/W2920799020","https://openalex.org/W2963503659","https://openalex.org/W2963678859","https://openalex.org/W3030741458","https://openalex.org/W4210960254","https://openalex.org/W4231137976"],"related_works":["https://openalex.org/W2093851833","https://openalex.org/W4211260167","https://openalex.org/W1598612135","https://openalex.org/W2019039916","https://openalex.org/W4378651560","https://openalex.org/W2587423827","https://openalex.org/W1541419779","https://openalex.org/W4388310705","https://openalex.org/W2087672650","https://openalex.org/W2507375922"],"abstract_inverted_index":{"Abstract":[0],"We":[1,11,34,62,87,110],"stochastically":[2],"model":[3,138],"two":[4],"bacterial":[5,116],"populations":[6],"which":[7],"can":[8],"produce":[9],"toxins.":[10],"propose":[12],"to":[13,139],"analyse":[14],"this":[15,47],"biological":[16],"system":[17],"by":[18,84,94,119],"following":[19],"the":[20,36,42,51,65,71,74,78,89,96,113,126,135],"dynamics":[21],"of":[22,38,44,53,68,73,80,91,105,134],"a":[23,39],"single":[24,40],"bacterium":[25,48,76],"during":[26,59],"its":[27,32,60,85],"lifetime,":[28],"as":[29,31],"well":[30],"progeny.":[33],"study":[35],"lifespan":[37],"bacterium,":[41],"number":[43,52,67,79],"divisions":[45],"that":[46,56],"undergoes,":[49],"and":[50,77,100,131],"toxin":[54,81,117],"molecules":[55,82],"it":[57],"produces":[58],"lifetime.":[61],"also":[63],"compute":[64],"mean":[66],"bacteria":[69,97],"in":[70,106,122],"genealogy":[72],"original":[75],"produced":[83],"genealogy.":[86],"illustrate":[88,140],"applicability":[90],"our":[92,141],"methods":[93],"considering":[95],"Bacillus":[98],"anthracis":[99],"antibiotic":[101],"treatment,":[102],"making":[103],"use":[104,133],"vitro":[107,123],"experimental":[108],"data.":[109],"quantify,":[111],"for":[112,125],"first":[114],"time,":[115],"production":[118],"exploiting":[120],"an":[121],"assay":[124],"A":[127],"16":[128],"R":[129],"strain,":[130],"make":[132],"resulting":[136],"parameterised":[137],"techniques.":[142]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
