{"id":"https://openalex.org/W3216169441","doi":"https://doi.org/10.1007/978-3-030-91814-9_6","title":"ContFree-NGS: Removing Reads from Contaminating Organisms in Next Generation Sequencing Data","display_name":"ContFree-NGS: Removing Reads from Contaminating Organisms in Next Generation Sequencing Data","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3216169441","doi":"https://doi.org/10.1007/978-3-030-91814-9_6","mag":"3216169441"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-91814-9_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-91814-9_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020895435","display_name":"Felipe Vaz Peres","orcid":"https://orcid.org/0000-0003-2791-4104"},"institutions":[{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Felipe Vaz Peres","raw_affiliation_strings":["Computational, Evolutionary and Systems Biology Laboratory, Center for Nuclear Energy in Agriculture, University of S\u00e3o Paulo, , S\u00e3o Paulo, Brazil","Federal University of S\u00e3o Carlos, , S\u00e3o Paulo, Brazil"],"raw_orcid":"https://orcid.org/0000-0003-2791-4104","affiliations":[{"raw_affiliation_string":"Computational, Evolutionary and Systems Biology Laboratory, Center for Nuclear Energy in Agriculture, University of S\u00e3o Paulo, , S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Federal University of S\u00e3o Carlos, , S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I177909021"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088590069","display_name":"Diego Mauricio Ria\u00f1o\u2010Pach\u00f3n","orcid":"https://orcid.org/0000-0001-9803-3465"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Diego Mauricio Ria\u00f1o-Pach\u00f3n","raw_affiliation_strings":["Computational, Evolutionary and Systems Biology Laboratory, Center for Nuclear Energy in Agriculture, University of S\u00e3o Paulo, , S\u00e3o Paulo, Brazil"],"raw_orcid":"https://orcid.org/0000-0001-9803-3465","affiliations":[{"raw_affiliation_string":"Computational, Evolutionary and Systems Biology Laboratory, Center for Nuclear Energy in Agriculture, University of S\u00e3o Paulo, , S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5020895435"],"corresponding_institution_ids":["https://openalex.org/I177909021","https://openalex.org/I17974374"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.5228,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.66505941,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"65","last_page":"68"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9634000062942505,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7057030200958252},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.6138705611228943},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.5546928644180298},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.523673951625824},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.44921520352363586},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4152871370315552},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20043399930000305},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1197233498096466},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.1165626049041748},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0807129442691803},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07917442917823792},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.05328229069709778}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7057030200958252},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.6138705611228943},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.5546928644180298},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.523673951625824},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.44921520352363586},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4152871370315552},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20043399930000305},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1197233498096466},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.1165626049041748},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0807129442691803},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07917442917823792},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.05328229069709778}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-91814-9_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-91814-9_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W2337747100","https://openalex.org/W2750586496","https://openalex.org/W2960146794","https://openalex.org/W2972476081","https://openalex.org/W2990618091","https://openalex.org/W3010833257","https://openalex.org/W3028050938"],"related_works":["https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W1590307681","https://openalex.org/W4312814274","https://openalex.org/W4285370786","https://openalex.org/W2296488620","https://openalex.org/W2358353312","https://openalex.org/W2353836703","https://openalex.org/W41015297","https://openalex.org/W4290716069"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
