{"id":"https://openalex.org/W3183003149","doi":"https://doi.org/10.1007/978-3-030-91814-9_5","title":"Combining Orthology and Xenology Data in a Common Phylogenetic Tree","display_name":"Combining Orthology and Xenology Data in a Common Phylogenetic Tree","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3183003149","doi":"https://doi.org/10.1007/978-3-030-91814-9_5","mag":"3183003149"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-91814-9_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-91814-9_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2107.01893","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019719296","display_name":"Marc Hellmuth","orcid":"https://orcid.org/0000-0002-1620-5508"},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Marc Hellmuth","raw_affiliation_strings":["Department of Mathematics, Faculty of Science, Stockholm University, Stockholm, Sweden","Stockholm University"],"raw_orcid":"https://orcid.org/0000-0002-1620-5508","affiliations":[{"raw_affiliation_string":"Department of Mathematics, Faculty of Science, Stockholm University, Stockholm, Sweden","institution_ids":["https://openalex.org/I161593684"]},{"raw_affiliation_string":"Stockholm University","institution_ids":["https://openalex.org/I161593684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053393911","display_name":"Mira Michel","orcid":null},"institutions":[{"id":"https://openalex.org/I120691247","display_name":"FernUniversit\u00e4t in Hagen","ror":"https://ror.org/04tkkr536","country_code":"DE","type":"education","lineage":["https://openalex.org/I120691247"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mira Michel","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Fernuniversit\u00e4t Hagen, Hagen, Germany","Univ. of Hagen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Fernuniversit\u00e4t Hagen, Hagen, Germany","institution_ids":["https://openalex.org/I120691247"]},{"raw_affiliation_string":"Univ. of Hagen","institution_ids":["https://openalex.org/I120691247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021113778","display_name":"Nikolai N\u00f8jgaard","orcid":"https://orcid.org/0000-0002-7053-4716"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Nikolai N. N\u00f8jgaard","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Southern Denmark, Odense M, Denmark","Department of Mathematics & Computer Science, University of Southern Denmark, Odense M, Denmark"],"raw_orcid":"https://orcid.org/0000-0002-7053-4716","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Odense M, Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"Department of Mathematics & Computer Science, University of Southern Denmark, Odense M, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088739752","display_name":"David Schaller","orcid":"https://orcid.org/0000-0002-0025-3097"},"institutions":[{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I4210119712","display_name":"Max Planck Institute for Mathematics","ror":"https://ror.org/02dh8ja68","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210119712"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David Schaller","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, Leipzig, Germany","Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany","leipzig university"],"raw_orcid":"https://orcid.org/0000-0002-0025-3097","affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany","institution_ids":["https://openalex.org/I4210119712","https://openalex.org/I4210091327"]},{"raw_affiliation_string":"leipzig university","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]},{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I4210119712","display_name":"Max Planck Institute for Mathematics","ror":"https://ror.org/02dh8ja68","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210119712"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["AT","CO","DE","US"],"is_corresponding":false,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, Leipzig, Germany","Facultad de Ciencias, Universidad Nacional de Colombia, Bogot\u00e1, Colombia","Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria","Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany","Santa Fe Institute, Santa Fe, USA","leipzig university"],"raw_orcid":"https://orcid.org/0000-0002-5016-5191","affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universit\u00e4t Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Facultad de Ciencias, Universidad Nacional de Colombia, Bogot\u00e1, Colombia","institution_ids":["https://openalex.org/I36243813"]},{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany","institution_ids":["https://openalex.org/I4210119712","https://openalex.org/I4210091327"]},{"raw_affiliation_string":"Santa Fe Institute, Santa Fe, USA","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"leipzig university","institution_ids":["https://openalex.org/I926574661"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5019719296"],"corresponding_institution_ids":["https://openalex.org/I161593684"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.5228,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.61761667,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"53","last_page":"64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9611999988555908,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9283000230789185,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.8286168575286865},{"id":"https://openalex.org/keywords/lambda","display_name":"Lambda","score":0.7642897963523865},{"id":"https://openalex.org/keywords/vertex","display_name":"Vertex (graph theory)","score":0.7642401456832886},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6741711497306824},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.5070788860321045},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.501476526260376},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4324643015861511},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.41944870352745056},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.3419543206691742},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.15077972412109375},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09922584891319275}],"concepts":[{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.8286168575286865},{"id":"https://openalex.org/C2778113609","wikidata":"https://www.wikidata.org/wiki/Q10897","display_name":"Lambda","level":2,"score":0.7642897963523865},{"id":"https://openalex.org/C80899671","wikidata":"https://www.wikidata.org/wiki/Q1304193","display_name":"Vertex (graph theory)","level":3,"score":0.7642401456832886},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6741711497306824},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5070788860321045},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.501476526260376},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4324643015861511},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.41944870352745056},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.3419543206691742},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.15077972412109375},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09922584891319275},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1007/978-3-030-91814-9_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-91814-9_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:sdu.dk:openaire_cris_publications/fd49a5f9-85d1-4c05-a99d-7e2c25a8f372","is_oa":false,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/fd49a5f9-85d1-4c05-a99d-7e2c25a8f372","pdf_url":null,"source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hellmuth, M, Miche, M, N\u00f8jgaard, N, Schaller, D & Stadler, P F 2021, Combining Orthology and Xenology Data in a Common Phylogenetic Tree. in P F Stadler, M E M T Walter, M Hernandez-Rosales & M M Brigido (eds), Advances in Bioinformatics and Computational Biology - 14th Brazilian Symposium on Bioinformatics, BSB 2021, Proceedings : 14th Brazilian Symposium on Bioinformatics, BSB 2021, Virtual Event, November 22\u201326, 2021, Proceedings. Springer, Lecture Notes in Computer Science, vol. 13063, pp. 53-64, 14th Brazilian Symposium on Bioinformatics, Virtual, 22/11/2021. https://doi.org/10.1007/978-3-030-91814-9_5","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:arXiv.org:2107.01893","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2107.01893","pdf_url":"https://arxiv.org/pdf/2107.01893","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"mag:3183003149","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/2107.01893","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2107.01893","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2107.01893","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2107.01893","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2107.01893","pdf_url":"https://arxiv.org/pdf/2107.01893","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W319819633","https://openalex.org/W2011999472","https://openalex.org/W2022221380","https://openalex.org/W2041346050","https://openalex.org/W2081804360","https://openalex.org/W2132318428","https://openalex.org/W2132553324","https://openalex.org/W2294558945","https://openalex.org/W2611766636","https://openalex.org/W2734849906","https://openalex.org/W2762409740","https://openalex.org/W2963246067","https://openalex.org/W2964266490","https://openalex.org/W3000021317","https://openalex.org/W3004232123","https://openalex.org/W3007983209","https://openalex.org/W3080790984","https://openalex.org/W3158029105","https://openalex.org/W3217100705","https://openalex.org/W4200303939","https://openalex.org/W4388212639","https://openalex.org/W6600330640"],"related_works":["https://openalex.org/W2099733342","https://openalex.org/W228589168","https://openalex.org/W3129042955","https://openalex.org/W1559308917","https://openalex.org/W1498560516","https://openalex.org/W3188059284","https://openalex.org/W2028431563","https://openalex.org/W3037519940","https://openalex.org/W2883695749","https://openalex.org/W3184530364","https://openalex.org/W2605088838","https://openalex.org/W2889708013","https://openalex.org/W2900242387","https://openalex.org/W1507020203","https://openalex.org/W1983869386","https://openalex.org/W2961430978","https://openalex.org/W2792400501","https://openalex.org/W2121422801","https://openalex.org/W2618078173","https://openalex.org/W167258023"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}