{"id":"https://openalex.org/W3216696221","doi":"https://doi.org/10.1007/978-3-030-91814-9_4","title":"CellHeap: A Workflow for Optimizing COVID-19 Single-Cell RNA-Seq Data Processing in the Santos Dumont Supercomputer","display_name":"CellHeap: A Workflow for Optimizing COVID-19 Single-Cell RNA-Seq Data Processing in the Santos Dumont Supercomputer","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3216696221","doi":"https://doi.org/10.1007/978-3-030-91814-9_4","mag":"3216696221"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-91814-9_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-91814-9_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023750545","display_name":"Vanessa S. Silva","orcid":"https://orcid.org/0000-0001-8200-4635"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Vanessa S. Silva","raw_affiliation_strings":["Oswaldo Cruz Foundation, Rio de Janeiro, Brazil"],"affiliations":[{"raw_affiliation_string":"Oswaldo Cruz Foundation, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023379459","display_name":"Maiana de Oliveira Cerqueira e Costa","orcid":"https://orcid.org/0000-0003-3819-3138"},"institutions":[{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maiana O. C. Costa","raw_affiliation_strings":["National Laboratory for Scientific Computing, Petropolis, Brazil"],"affiliations":[{"raw_affiliation_string":"National Laboratory for Scientific Computing, Petropolis, Brazil","institution_ids":["https://openalex.org/I4210142352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007319418","display_name":"Maria Clicia Castro","orcid":"https://orcid.org/0000-0002-6315-1215"},"institutions":[{"id":"https://openalex.org/I40034438","display_name":"Universidade do Estado do Rio de Janeiro","ror":"https://ror.org/0198v2949","country_code":"BR","type":"education","lineage":["https://openalex.org/I40034438"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maria Clicia S. Castro","raw_affiliation_strings":["State University of Rio de Janeiro, Rio de Janeiro, Brazil"],"affiliations":[{"raw_affiliation_string":"State University of Rio de Janeiro, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I40034438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000337664","display_name":"Helena S. I. L. Silva","orcid":"https://orcid.org/0000-0002-1953-880X"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Helena S. Silva","raw_affiliation_strings":["University of Brasilia, Brasilia, Brazil"],"affiliations":[{"raw_affiliation_string":"University of Brasilia, Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071276748","display_name":"Maria Em\u00edlia M. T. Walter","orcid":"https://orcid.org/0000-0001-6822-931X"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maria Emilia M. T. Walter","raw_affiliation_strings":["University of Brasilia, Brasilia, Brazil","University of Bras\u00edlia, Brasilia, Brazil"],"affiliations":[{"raw_affiliation_string":"University of Brasilia, Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]},{"raw_affiliation_string":"University of Bras\u00edlia, Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005717412","display_name":"Alba Cristina Magalh\u00e3es Alves de Melo","orcid":"https://orcid.org/0000-0001-5191-5209"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Alba C. M. A. Melo","raw_affiliation_strings":["University of Brasilia, Brasilia, Brazil"],"affiliations":[{"raw_affiliation_string":"University of Brasilia, Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042169127","display_name":"Kary Oca\u00f1a","orcid":"https://orcid.org/0000-0002-2151-7418"},"institutions":[{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Kary A. C. Oca\u00f1a","raw_affiliation_strings":["National Laboratory for Scientific Computing, Petropolis, Brazil"],"affiliations":[{"raw_affiliation_string":"National Laboratory for Scientific Computing, Petropolis, Brazil","institution_ids":["https://openalex.org/I4210142352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022707882","display_name":"Marcelo Trindade dos Santos","orcid":"https://orcid.org/0000-0002-7083-0435"},"institutions":[{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marcelo T. dos Santos","raw_affiliation_strings":["National Laboratory for Scientific Computing, Petropolis, Brazil"],"affiliations":[{"raw_affiliation_string":"National Laboratory for Scientific Computing, Petropolis, Brazil","institution_ids":["https://openalex.org/I4210142352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053221025","display_name":"Marisa Nicol\u00e1s","orcid":"https://orcid.org/0000-0002-5437-2737"},"institutions":[{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marisa F. Nicolas","raw_affiliation_strings":["National Laboratory for Scientific Computing, Petropolis, Brazil"],"affiliations":[{"raw_affiliation_string":"National Laboratory for Scientific Computing, Petropolis, Brazil","institution_ids":["https://openalex.org/I4210142352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055068464","display_name":"Anna Cristina Cal\u00e7ada Carvalho","orcid":"https://orcid.org/0000-0002-0128-942X"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Anna Cristina C. Carvalho","raw_affiliation_strings":["Oswaldo Cruz Foundation, Rio de Janeiro, Brazil"],"affiliations":[{"raw_affiliation_string":"Oswaldo Cruz Foundation, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010909275","display_name":"Andrea Henriques\u2010Pons","orcid":"https://orcid.org/0000-0001-9136-240X"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Andrea Henriques-Pons","raw_affiliation_strings":["Oswaldo Cruz Foundation, Rio de Janeiro, Brazil"],"affiliations":[{"raw_affiliation_string":"Oswaldo Cruz Foundation, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026958427","display_name":"Fabr\u00edcio Alves Barbosa da Silva","orcid":"https://orcid.org/0000-0002-8172-5796"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Fabr\u00edcio A. B. Silva","raw_affiliation_strings":["Oswaldo Cruz Foundation, Rio de Janeiro, Brazil"],"affiliations":[{"raw_affiliation_string":"Oswaldo Cruz Foundation, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5023750545"],"corresponding_institution_ids":["https://openalex.org/I52325"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.5673,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.84077586,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"41","last_page":"52"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terabyte","display_name":"Terabyte","score":0.9713350534439087},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.851299524307251},{"id":"https://openalex.org/keywords/petabyte","display_name":"Petabyte","score":0.8296873569488525},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.8063889741897583},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7816447615623474},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.606533944606781},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5026483535766602},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.44990405440330505},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4066771864891052},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.40106201171875},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.38788166642189026},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3076271116733551},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27995574474334717},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.2737535536289215},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.2398005723953247},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2272455394268036},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07767164707183838}],"concepts":[{"id":"https://openalex.org/C199683683","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Terabyte","level":2,"score":0.9713350534439087},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.851299524307251},{"id":"https://openalex.org/C13600138","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Petabyte","level":3,"score":0.8296873569488525},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.8063889741897583},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7816447615623474},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.606533944606781},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5026483535766602},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.44990405440330505},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4066771864891052},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.40106201171875},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.38788166642189026},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3076271116733551},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27995574474334717},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.2737535536289215},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.2398005723953247},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2272455394268036},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07767164707183838},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-91814-9_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-91814-9_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6399999856948853,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1989277387","https://openalex.org/W2010457001","https://openalex.org/W2015329331","https://openalex.org/W2102212449","https://openalex.org/W2110041134","https://openalex.org/W2147018385","https://openalex.org/W2155606843","https://openalex.org/W2158217645","https://openalex.org/W2341128841","https://openalex.org/W2342807339","https://openalex.org/W2345356016","https://openalex.org/W2586637063","https://openalex.org/W2607806728","https://openalex.org/W2609265534","https://openalex.org/W2770880161","https://openalex.org/W2774644977","https://openalex.org/W2886347923","https://openalex.org/W2931036699","https://openalex.org/W2949177718","https://openalex.org/W2949237386","https://openalex.org/W2950372712","https://openalex.org/W2951506174","https://openalex.org/W2951799803","https://openalex.org/W2979981308","https://openalex.org/W2982521190","https://openalex.org/W2992877265","https://openalex.org/W3001046415","https://openalex.org/W3022248657","https://openalex.org/W3024643080","https://openalex.org/W3047168254","https://openalex.org/W3047402958","https://openalex.org/W3083903534","https://openalex.org/W3110917833","https://openalex.org/W3112300343","https://openalex.org/W3114522069","https://openalex.org/W3126621106","https://openalex.org/W3157834780","https://openalex.org/W3164692211","https://openalex.org/W4230640326","https://openalex.org/W4233698560","https://openalex.org/W6784195601"],"related_works":["https://openalex.org/W2214057790","https://openalex.org/W3003246775","https://openalex.org/W2260589296","https://openalex.org/W2990494149","https://openalex.org/W2520013886","https://openalex.org/W3036331704","https://openalex.org/W182946475","https://openalex.org/W3157828377","https://openalex.org/W2884664968","https://openalex.org/W3216696221"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
