{"id":"https://openalex.org/W3191215204","doi":"https://doi.org/10.1007/978-3-030-84532-2_35","title":"Using Deep Learning to Predict Transcription Factor Binding Sites Combining Raw DNA Sequence, Evolutionary Information and Epigenomic Data","display_name":"Using Deep Learning to Predict Transcription Factor Binding Sites Combining Raw DNA Sequence, Evolutionary Information and Epigenomic Data","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3191215204","doi":"https://doi.org/10.1007/978-3-030-84532-2_35","mag":"3191215204"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-84532-2_35","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-84532-2_35","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070692070","display_name":"Youhong Xu","orcid":"https://orcid.org/0000-0003-0085-8202"},"institutions":[{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]},{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]},{"id":"https://openalex.org/I4210151929","display_name":"Nanning Normal University","ror":"https://ror.org/04dx82x73","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210151929"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Youhong Xu","raw_affiliation_strings":["Guangxi Academy of Science, Nanning, 530007, China","School of Computer and Information Engineering, Nanning Normal University, Nanning, 530299, China","School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China"],"affiliations":[{"raw_affiliation_string":"Guangxi Academy of Science, Nanning, 530007, China","institution_ids":["https://openalex.org/I4210165264"]},{"raw_affiliation_string":"School of Computer and Information Engineering, Nanning Normal University, Nanning, 530299, China","institution_ids":["https://openalex.org/I4210151929"]},{"raw_affiliation_string":"School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China","institution_ids":["https://openalex.org/I308837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052381471","display_name":"Qinghu Zhang","orcid":"https://orcid.org/0000-0002-8556-9428"},"institutions":[{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]},{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]},{"id":"https://openalex.org/I4210151929","display_name":"Nanning Normal University","ror":"https://ror.org/04dx82x73","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210151929"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinghu Zhang","raw_affiliation_strings":["Guangxi Academy of Science, Nanning, 530007, China","School of Computer and Information Engineering, Nanning Normal University, Nanning, 530299, China","School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China"],"affiliations":[{"raw_affiliation_string":"Guangxi Academy of Science, Nanning, 530007, China","institution_ids":["https://openalex.org/I4210165264"]},{"raw_affiliation_string":"School of Computer and Information Engineering, Nanning Normal University, Nanning, 530299, China","institution_ids":["https://openalex.org/I4210151929"]},{"raw_affiliation_string":"School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China","institution_ids":["https://openalex.org/I308837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086830192","display_name":"Zhan\u2010Heng Chen","orcid":"https://orcid.org/0000-0002-2331-4446"},"institutions":[{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]},{"id":"https://openalex.org/I4210151929","display_name":"Nanning Normal University","ror":"https://ror.org/04dx82x73","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210151929"]},{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhanheng Chen","raw_affiliation_strings":["Guangxi Academy of Science, Nanning, 530007, China","School of Computer and Information Engineering, Nanning Normal University, Nanning, 530299, China","School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China"],"affiliations":[{"raw_affiliation_string":"Guangxi Academy of Science, Nanning, 530007, China","institution_ids":["https://openalex.org/I4210165264"]},{"raw_affiliation_string":"School of Computer and Information Engineering, Nanning Normal University, Nanning, 530299, China","institution_ids":["https://openalex.org/I4210151929"]},{"raw_affiliation_string":"School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China","institution_ids":["https://openalex.org/I308837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007724310","display_name":"Changan Yuan","orcid":"https://orcid.org/0000-0001-6912-718X"},"institutions":[{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changan Yuan","raw_affiliation_strings":["Guangxi Academy of Science, Nanning, 530007, China"],"affiliations":[{"raw_affiliation_string":"Guangxi Academy of Science, Nanning, 530007, China","institution_ids":["https://openalex.org/I4210165264"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102706738","display_name":"Xiao Qin","orcid":"https://orcid.org/0000-0003-3237-7083"},"institutions":[{"id":"https://openalex.org/I4210151929","display_name":"Nanning Normal University","ror":"https://ror.org/04dx82x73","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210151929"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Qin","raw_affiliation_strings":["School of Computer and Information Engineering, Nanning Normal University, Nanning, 530299, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Information Engineering, Nanning Normal University, Nanning, 530299, China","institution_ids":["https://openalex.org/I4210151929"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076525932","display_name":"Hongjie Wu","orcid":"https://orcid.org/0000-0001-5921-8707"},"institutions":[{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongjie Wu","raw_affiliation_strings":["School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China"],"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China","institution_ids":["https://openalex.org/I308837"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070692070"],"corresponding_institution_ids":["https://openalex.org/I308837","https://openalex.org/I4210151929","https://openalex.org/I4210165264"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13948276,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"385","last_page":"395"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenomics","display_name":"Epigenomics","score":0.7506701946258545},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6026511192321777},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5798426270484924},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5219520926475525},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.4934636652469635},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44489920139312744},{"id":"https://openalex.org/keywords/methylated-dna-immunoprecipitation","display_name":"Methylated DNA immunoprecipitation","score":0.4103868007659912},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3963382840156555},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.38171350955963135},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3210335373878479},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.28212296962738037},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24841880798339844},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19019263982772827},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.09212088584899902}],"concepts":[{"id":"https://openalex.org/C121912465","wikidata":"https://www.wikidata.org/wiki/Q3589153","display_name":"Epigenomics","level":5,"score":0.7506701946258545},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6026511192321777},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5798426270484924},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5219520926475525},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.4934636652469635},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44489920139312744},{"id":"https://openalex.org/C116114238","wikidata":"https://www.wikidata.org/wiki/Q6823960","display_name":"Methylated DNA immunoprecipitation","level":5,"score":0.4103868007659912},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3963382840156555},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.38171350955963135},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3210335373878479},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.28212296962738037},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24841880798339844},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19019263982772827},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.09212088584899902},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-84532-2_35","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-84532-2_35","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1533861849","https://openalex.org/W1980825481","https://openalex.org/W1983658501","https://openalex.org/W1990893875","https://openalex.org/W1992353797","https://openalex.org/W1994122295","https://openalex.org/W2012627860","https://openalex.org/W2021282293","https://openalex.org/W2062402656","https://openalex.org/W2087058596","https://openalex.org/W2087892194","https://openalex.org/W2098412979","https://openalex.org/W2116251070","https://openalex.org/W2137465688","https://openalex.org/W2149769193","https://openalex.org/W2153561273","https://openalex.org/W2154855927","https://openalex.org/W2159324718","https://openalex.org/W2200765899","https://openalex.org/W2295745415","https://openalex.org/W2460762678","https://openalex.org/W2571752074","https://openalex.org/W2604947511","https://openalex.org/W2621850397","https://openalex.org/W2729704924","https://openalex.org/W2734575741","https://openalex.org/W2785792383","https://openalex.org/W2789652838","https://openalex.org/W2855858596","https://openalex.org/W2885815722","https://openalex.org/W2896262061","https://openalex.org/W2909854604","https://openalex.org/W2949275670","https://openalex.org/W2963601856","https://openalex.org/W2964758100","https://openalex.org/W2966018231","https://openalex.org/W2980975636","https://openalex.org/W3011049612","https://openalex.org/W3033689705"],"related_works":["https://openalex.org/W2946746360","https://openalex.org/W4318473910","https://openalex.org/W2075276275","https://openalex.org/W2485219568","https://openalex.org/W2019769511","https://openalex.org/W2121654623","https://openalex.org/W2100856525","https://openalex.org/W2119272378","https://openalex.org/W2028628069","https://openalex.org/W2606237140"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
