{"id":"https://openalex.org/W3096609672","doi":"https://doi.org/10.1007/978-3-030-60802-6_9","title":"Predicting in-Vitro Transcription Factor Binding Sites with Deep Embedding Convolution Network","display_name":"Predicting in-Vitro Transcription Factor Binding Sites with Deep Embedding Convolution Network","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3096609672","doi":"https://doi.org/10.1007/978-3-030-60802-6_9","mag":"3096609672"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-60802-6_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-60802-6_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107747897","display_name":"Yindong Zhang","orcid":"https://orcid.org/0000-0003-2105-4422"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yindong Zhang","raw_affiliation_strings":["Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062540383","display_name":"Qinhu Zhang","orcid":"https://orcid.org/0000-0002-4232-7736"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinhu Zhang","raw_affiliation_strings":["Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007724310","display_name":"Changan Yuan","orcid":"https://orcid.org/0000-0001-6912-718X"},"institutions":[{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changan Yuan","raw_affiliation_strings":["Guangxi Academy of Science, Nanning, China"],"affiliations":[{"raw_affiliation_string":"Guangxi Academy of Science, Nanning, China","institution_ids":["https://openalex.org/I4210165264"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102706738","display_name":"Xiao Qin","orcid":"https://orcid.org/0000-0003-3237-7083"},"institutions":[{"id":"https://openalex.org/I4210151929","display_name":"Nanning Normal University","ror":"https://ror.org/04dx82x73","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210151929"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Qin","raw_affiliation_strings":["School of Computer and Information Engineering, Nanning Normal University, Nanning, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Information Engineering, Nanning Normal University, Nanning, China","institution_ids":["https://openalex.org/I4210151929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076525932","display_name":"Hongjie Wu","orcid":"https://orcid.org/0000-0001-5921-8707"},"institutions":[{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongjie Wu","raw_affiliation_strings":["School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, China","institution_ids":["https://openalex.org/I308837"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049435754","display_name":"Xing\u2010Ming Zhao","orcid":"https://orcid.org/0000-0002-4531-3970"},"institutions":[{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingming Zhao","raw_affiliation_strings":["Institute of Science and Technology for Brain Inspired Intelligence (ISTBI), Fudan University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain Inspired Intelligence (ISTBI), Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5107747897"],"corresponding_institution_ids":["https://openalex.org/I116953780"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.3936,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.64226304,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"90","last_page":"100"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/overfitting","display_name":"Overfitting","score":0.7767423987388611},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7296000719070435},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5977720618247986},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5833329558372498},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5286441445350647},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.49612078070640564},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4253469407558441},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.3929426968097687},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3846854865550995},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3760319948196411},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37185922265052795},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3344919979572296},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32898908853530884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18356618285179138},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13792839646339417},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.09927955269813538}],"concepts":[{"id":"https://openalex.org/C22019652","wikidata":"https://www.wikidata.org/wiki/Q331309","display_name":"Overfitting","level":3,"score":0.7767423987388611},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7296000719070435},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5977720618247986},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5833329558372498},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5286441445350647},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.49612078070640564},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4253469407558441},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3929426968097687},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3846854865550995},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3760319948196411},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37185922265052795},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3344919979572296},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32898908853530884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18356618285179138},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13792839646339417},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.09927955269813538},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-60802-6_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-60802-6_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1518026427","https://openalex.org/W1990893875","https://openalex.org/W1992353797","https://openalex.org/W1994122295","https://openalex.org/W2012627860","https://openalex.org/W2087058596","https://openalex.org/W2098412979","https://openalex.org/W2137465688","https://openalex.org/W2149769193","https://openalex.org/W2154855927","https://openalex.org/W2159324718","https://openalex.org/W2295745415","https://openalex.org/W2433743436","https://openalex.org/W2460762678","https://openalex.org/W2621850397","https://openalex.org/W2734575741","https://openalex.org/W2757038198","https://openalex.org/W2785792383","https://openalex.org/W2789652838","https://openalex.org/W2885815722","https://openalex.org/W2896262061","https://openalex.org/W2942090527","https://openalex.org/W2949275670","https://openalex.org/W2963601856","https://openalex.org/W2976217562","https://openalex.org/W2980975636","https://openalex.org/W4200351727"],"related_works":["https://openalex.org/W4362597605","https://openalex.org/W1574414179","https://openalex.org/W4297676672","https://openalex.org/W3009056573","https://openalex.org/W2922073769","https://openalex.org/W4281702477","https://openalex.org/W2490526372","https://openalex.org/W4376166922","https://openalex.org/W3099765033","https://openalex.org/W2932872266"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
