{"id":"https://openalex.org/W3090215685","doi":"https://doi.org/10.1007/978-3-030-59612-5_6","title":"Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark","display_name":"Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3090215685","doi":"https://doi.org/10.1007/978-3-030-59612-5_6","mag":"3090215685"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-59612-5_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-59612-5_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10138/322063","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091280428","display_name":"Altti Ilari Maarala","orcid":"https://orcid.org/0000-0001-8851-4265"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Altti Ilari Maarala","raw_affiliation_strings":["Department of Computer Science, University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021045497","display_name":"Ossi Arasalo","orcid":"https://orcid.org/0000-0002-8970-8368"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Ossi Arasalo","raw_affiliation_strings":["Department of Computer Science, Aalto University, Espoo, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Aalto University, Espoo, Finland","institution_ids":["https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019540563","display_name":"Daniel Valenzuela","orcid":"https://orcid.org/0000-0001-8244-2299"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Daniel Valenzuela","raw_affiliation_strings":["Department of Computer Science, University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078732211","display_name":"Keijo Heljanko","orcid":"https://orcid.org/0000-0002-4547-2701"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Keijo Heljanko","raw_affiliation_strings":["Department of Computer Science, University of Helsinki, Helsinki, Finland","Helsinki Institute for Information Technology, HIIT, Espoo, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Helsinki Institute for Information Technology, HIIT, Espoo, Finland","institution_ids":["https://openalex.org/I32943570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043558409","display_name":"Veli M\u00e4kinen","orcid":"https://orcid.org/0000-0003-4454-1493"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Veli M\u00e4kinen","raw_affiliation_strings":["Helsinki Institute for Information Technology, HIIT, Espoo, Finland","Department of Computer Science, University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Helsinki Institute for Information Technology, HIIT, Espoo, Finland","institution_ids":["https://openalex.org/I32943570"]},{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5091280428"],"corresponding_institution_ids":["https://openalex.org/I133731052"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.7872,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.74692428,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"68","last_page":"84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9531000256538391,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.778357207775116},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.6356170177459717},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5432828664779663},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5223497152328491},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5045932531356812},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4894648790359497},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.48861223459243774},{"id":"https://openalex.org/keywords/1000-genomes-project","display_name":"1000 Genomes Project","score":0.45864492654800415},{"id":"https://openalex.org/keywords/structural-variation","display_name":"Structural variation","score":0.44560375809669495},{"id":"https://openalex.org/keywords/personal-genomics","display_name":"Personal genomics","score":0.4415159225463867},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.42538726329803467},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3858218193054199},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29504382610321045},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18032774329185486},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14880046248435974},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.09898540377616882},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09670153260231018}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.778357207775116},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.6356170177459717},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5432828664779663},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5223497152328491},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5045932531356812},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4894648790359497},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.48861223459243774},{"id":"https://openalex.org/C97425143","wikidata":"https://www.wikidata.org/wiki/Q164786","display_name":"1000 Genomes Project","level":5,"score":0.45864492654800415},{"id":"https://openalex.org/C151020129","wikidata":"https://www.wikidata.org/wiki/Q7625067","display_name":"Structural variation","level":4,"score":0.44560375809669495},{"id":"https://openalex.org/C24103923","wikidata":"https://www.wikidata.org/wiki/Q7170583","display_name":"Personal genomics","level":5,"score":0.4415159225463867},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.42538726329803467},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3858218193054199},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29504382610321045},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18032774329185486},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14880046248435974},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.09898540377616882},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09670153260231018},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-030-59612-5_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-59612-5_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:helda.helsinki.fi:10138/322063","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/322063","pdf_url":"http://hdl.handle.net/10138/322063","source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference contribution"}],"best_oa_location":{"id":"pmh:oai:helda.helsinki.fi:10138/322063","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/322063","pdf_url":"http://hdl.handle.net/10138/322063","source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference contribution"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3090215685.pdf","grobid_xml":"https://content.openalex.org/works/W3090215685.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1963459864","https://openalex.org/W1978981589","https://openalex.org/W2011210839","https://openalex.org/W2075576453","https://openalex.org/W2103441770","https://openalex.org/W2104549677","https://openalex.org/W2107745473","https://openalex.org/W2114839482","https://openalex.org/W2124985265","https://openalex.org/W2129264270","https://openalex.org/W2131975293","https://openalex.org/W2134819521","https://openalex.org/W2136043658","https://openalex.org/W2137351413","https://openalex.org/W2150550043","https://openalex.org/W2159670728","https://openalex.org/W2160363604","https://openalex.org/W2173213060","https://openalex.org/W2486514928","https://openalex.org/W2522993044","https://openalex.org/W2594239943","https://openalex.org/W2604017081","https://openalex.org/W2748355304","https://openalex.org/W2765816545","https://openalex.org/W2782908004","https://openalex.org/W2799595459","https://openalex.org/W2901214479","https://openalex.org/W2952366981","https://openalex.org/W2964679279","https://openalex.org/W3005228641"],"related_works":["https://openalex.org/W2949103014","https://openalex.org/W2153994884","https://openalex.org/W4386305329","https://openalex.org/W3091481517","https://openalex.org/W2297084330","https://openalex.org/W2138603354","https://openalex.org/W1983695505","https://openalex.org/W2952870794","https://openalex.org/W2107688500","https://openalex.org/W2802105235"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
