{"id":"https://openalex.org/W3056004776","doi":"https://doi.org/10.1007/978-3-030-57821-3_18","title":"TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity","display_name":"TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3056004776","doi":"https://doi.org/10.1007/978-3-030-57821-3_18","mag":"3056004776"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-57821-3_18","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-57821-3_18","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013895004","display_name":"Saurav Dhar","orcid":"https://orcid.org/0000-0002-1782-3703"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saurav Dhar","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089898009","display_name":"Chengchen Zhang","orcid":"https://orcid.org/0000-0001-8802-539X"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chengchen Zhang","raw_affiliation_strings":["Computer Science and Engineering, University of California, San Diego, USA","Department of Computer Science and Engineering, University of Connecticut, Storrs, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, University of California, San Diego, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014788373","display_name":"Ion M\u0103ndoiu","orcid":"https://orcid.org/0000-0002-4818-0237"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ion Mandoiu","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, USA","Institute for Systems Genomics, University of Connecticut, Storrs, USA","University of Connecticut, Storrs Mansfield, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Institute for Systems Genomics, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"University of Connecticut, Storrs Mansfield, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024793976","display_name":"Mukul S. Bansal","orcid":"https://orcid.org/0000-0003-0039-2596"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mukul S. Bansal","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, USA","Institute for Systems Genomics, University of Connecticut, Storrs, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Institute for Systems Genomics, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.9474,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.94412781,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"203","last_page":"216"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9717000126838684,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7430515289306641},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7332994937896729},{"id":"https://openalex.org/keywords/transmission","display_name":"Transmission (telecommunications)","score":0.706326961517334},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6354029774665833},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6252599954605103},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5868517160415649},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5694965720176697},{"id":"https://openalex.org/keywords/strain","display_name":"Strain (injury)","score":0.49100592732429504},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34797927737236023},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34759530425071716},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27571040391921997},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13586768507957458},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10141965746879578},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08443787693977356}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7430515289306641},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7332994937896729},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.706326961517334},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6354029774665833},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6252599954605103},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5868517160415649},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5694965720176697},{"id":"https://openalex.org/C2778022156","wikidata":"https://www.wikidata.org/wiki/Q576145","display_name":"Strain (injury)","level":2,"score":0.49100592732429504},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34797927737236023},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34759530425071716},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27571040391921997},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13586768507957458},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10141965746879578},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08443787693977356},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-57821-3_18","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-57821-3_18","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W2065973977","https://openalex.org/W2124637492","https://openalex.org/W2124838434","https://openalex.org/W2128868625","https://openalex.org/W2141052558","https://openalex.org/W2146397496","https://openalex.org/W2148301044","https://openalex.org/W2163892779","https://openalex.org/W2211601939","https://openalex.org/W2280931876","https://openalex.org/W2294528210","https://openalex.org/W2385352626","https://openalex.org/W2577533595","https://openalex.org/W2596333466","https://openalex.org/W2615098984","https://openalex.org/W2638023010","https://openalex.org/W2768076146","https://openalex.org/W2773187618","https://openalex.org/W2791212039","https://openalex.org/W2793085614","https://openalex.org/W2802206205","https://openalex.org/W2804409418","https://openalex.org/W2887199083","https://openalex.org/W2949210352","https://openalex.org/W2982116541","https://openalex.org/W2983705148","https://openalex.org/W4254717640"],"related_works":["https://openalex.org/W4312203868","https://openalex.org/W2389214306","https://openalex.org/W2059637021","https://openalex.org/W2038264393","https://openalex.org/W4235240664","https://openalex.org/W2362218761","https://openalex.org/W1997023990","https://openalex.org/W2062354928","https://openalex.org/W2113708670","https://openalex.org/W2088120817"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
