{"id":"https://openalex.org/W3021349950","doi":"https://doi.org/10.1007/978-3-030-46165-2_10","title":"RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data","display_name":"RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3021349950","doi":"https://doi.org/10.1007/978-3-030-46165-2_10","mag":"3021349950"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-46165-2_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-46165-2_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071275743","display_name":"Patrick Perkins","orcid":null},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Patrick Perkins","raw_affiliation_strings":["North Carolina State University, Raleigh, NC, 27502, USA"],"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, NC, 27502, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087217264","display_name":"Anna N. Stepanova","orcid":"https://orcid.org/0000-0003-1018-4758"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Stepanova","raw_affiliation_strings":["North Carolina State University, Raleigh, NC, 27502, USA"],"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, NC, 27502, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006531102","display_name":"Jos\u00e9 M. Alonso","orcid":"https://orcid.org/0000-0001-7087-1571"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jose Alonso","raw_affiliation_strings":["North Carolina State University, Raleigh, NC, 27502, USA"],"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, NC, 27502, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058462301","display_name":"Steffen Heber","orcid":"https://orcid.org/0000-0002-1050-3635"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steffen Heber","raw_affiliation_strings":["North Carolina State University, Raleigh, NC, 27502, USA"],"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, NC, 27502, USA","institution_ids":["https://openalex.org/I137902535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5071275743"],"corresponding_institution_ids":["https://openalex.org/I137902535"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.3936,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58525386,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":null,"issue":null,"first_page":"121","last_page":"133"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7916247844696045},{"id":"https://openalex.org/keywords/parametric-statistics","display_name":"Parametric statistics","score":0.5823882818222046},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.5212967395782471},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.49634677171707153},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4827953577041626},{"id":"https://openalex.org/keywords/differential-evolution","display_name":"Differential evolution","score":0.4579100012779236},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.43842145800590515},{"id":"https://openalex.org/keywords/variance","display_name":"Variance (accounting)","score":0.41875749826431274},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.359829306602478},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34234389662742615},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1706029772758484},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14517486095428467},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.1367473304271698},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11941957473754883},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10673049092292786},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10116684436798096},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.10066738724708557}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7916247844696045},{"id":"https://openalex.org/C117251300","wikidata":"https://www.wikidata.org/wiki/Q1849855","display_name":"Parametric statistics","level":2,"score":0.5823882818222046},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.5212967395782471},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.49634677171707153},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4827953577041626},{"id":"https://openalex.org/C74750220","wikidata":"https://www.wikidata.org/wiki/Q2662197","display_name":"Differential evolution","level":2,"score":0.4579100012779236},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.43842145800590515},{"id":"https://openalex.org/C196083921","wikidata":"https://www.wikidata.org/wiki/Q7915758","display_name":"Variance (accounting)","level":2,"score":0.41875749826431274},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.359829306602478},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34234389662742615},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1706029772758484},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14517486095428467},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.1367473304271698},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11941957473754883},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10673049092292786},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10116684436798096},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.10066738724708557},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C121955636","wikidata":"https://www.wikidata.org/wiki/Q4116214","display_name":"Accounting","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-46165-2_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-46165-2_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1974611660","https://openalex.org/W1981509058","https://openalex.org/W1989212815","https://openalex.org/W2068614693","https://openalex.org/W2079517684","https://openalex.org/W2098831884","https://openalex.org/W2109101518","https://openalex.org/W2110017531","https://openalex.org/W2112876600","https://openalex.org/W2114104545","https://openalex.org/W2126398084","https://openalex.org/W2133594999","https://openalex.org/W2136785377","https://openalex.org/W2137526110","https://openalex.org/W2152239989","https://openalex.org/W2161318011","https://openalex.org/W2319914265","https://openalex.org/W2774866096","https://openalex.org/W2801543545"],"related_works":["https://openalex.org/W4200033037","https://openalex.org/W3213655218","https://openalex.org/W3147425560","https://openalex.org/W2233436997","https://openalex.org/W3018517591","https://openalex.org/W2547207246","https://openalex.org/W4236119335","https://openalex.org/W2157557172","https://openalex.org/W2163515958","https://openalex.org/W3134983716"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
