{"id":"https://openalex.org/W3013005428","doi":"https://doi.org/10.1007/978-3-030-44534-8_23","title":"A Block-Based Systolic Array on an HBM2 FPGA for DNA Sequence Alignment","display_name":"A Block-Based Systolic Array on an HBM2 FPGA for DNA Sequence Alignment","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3013005428","doi":"https://doi.org/10.1007/978-3-030-44534-8_23","mag":"3013005428"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-44534-8_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-44534-8_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035433965","display_name":"Riadh Ben Abdelhamid","orcid":"https://orcid.org/0000-0001-8504-4739"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Riadh Ben Abdelhamid","raw_affiliation_strings":["Graduate School of Systems and Information Engineering, University of Tsukuba, 1-1-1 Ten-ou-dai, Tsukuba, Ibaraki, 305-8573, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Systems and Information Engineering, University of Tsukuba, 1-1-1 Ten-ou-dai, Tsukuba, Ibaraki, 305-8573, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060442383","display_name":"Yoshiki Yamaguchi","orcid":"https://orcid.org/0000-0001-9744-8271"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshiki Yamaguchi","raw_affiliation_strings":["Faculty of Engineering, Information and Systems, University of Tsukuba, 1-1-1 Ten-ou-dai, Tsukuba, Ibaraki, 305-8573, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, Information and Systems, University of Tsukuba, 1-1-1 Ten-ou-dai, Tsukuba, Ibaraki, 305-8573, Japan","institution_ids":["https://openalex.org/I146399215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5035433965"],"corresponding_institution_ids":["https://openalex.org/I146399215"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":5.8759,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.96432229,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"298","last_page":"313"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.834471583366394},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7586913704872131},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7046998143196106},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.6499544978141785},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.6338992714881897},{"id":"https://openalex.org/keywords/bandwidth","display_name":"Bandwidth (computing)","score":0.5960290431976318},{"id":"https://openalex.org/keywords/systolic-array","display_name":"Systolic array","score":0.5944036245346069},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.5379022359848022},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.5128514766693115},{"id":"https://openalex.org/keywords/memory-bandwidth","display_name":"Memory bandwidth","score":0.4440820813179016},{"id":"https://openalex.org/keywords/byte","display_name":"Byte","score":0.4345763623714447},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.41587546467781067},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40679430961608887},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.2265845239162445},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.20511609315872192},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.14986750483512878},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.11624091863632202},{"id":"https://openalex.org/keywords/very-large-scale-integration","display_name":"Very-large-scale integration","score":0.10840123891830444}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.834471583366394},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7586913704872131},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7046998143196106},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.6499544978141785},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.6338992714881897},{"id":"https://openalex.org/C2776257435","wikidata":"https://www.wikidata.org/wiki/Q1576430","display_name":"Bandwidth (computing)","level":2,"score":0.5960290431976318},{"id":"https://openalex.org/C150741067","wikidata":"https://www.wikidata.org/wiki/Q2377218","display_name":"Systolic array","level":3,"score":0.5944036245346069},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.5379022359848022},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.5128514766693115},{"id":"https://openalex.org/C188045654","wikidata":"https://www.wikidata.org/wiki/Q17148339","display_name":"Memory bandwidth","level":2,"score":0.4440820813179016},{"id":"https://openalex.org/C43364308","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Byte","level":2,"score":0.4345763623714447},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.41587546467781067},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40679430961608887},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.2265845239162445},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.20511609315872192},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.14986750483512878},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.11624091863632202},{"id":"https://openalex.org/C14580979","wikidata":"https://www.wikidata.org/wiki/Q876049","display_name":"Very-large-scale integration","level":2,"score":0.10840123891830444},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-44534-8_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-44534-8_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.8799999952316284}],"awards":[{"id":"https://openalex.org/G1434721869","display_name":"Highly parallel computing with many corallum mimic architecture","funder_award_id":"17H01707","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4454983236","display_name":"High performance computing platform by GPU and FPGA","funder_award_id":"18H03246","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W174575216","https://openalex.org/W1585577780","https://openalex.org/W1999887682","https://openalex.org/W2015915218","https://openalex.org/W2017369466","https://openalex.org/W2017972683","https://openalex.org/W2055043387","https://openalex.org/W2065461987","https://openalex.org/W2066852475","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2260037449","https://openalex.org/W2344543892","https://openalex.org/W2471092755","https://openalex.org/W2606268188","https://openalex.org/W2613537099","https://openalex.org/W2769167815","https://openalex.org/W2790922847","https://openalex.org/W2900776157","https://openalex.org/W6677534531"],"related_works":["https://openalex.org/W4240320454","https://openalex.org/W2070314832","https://openalex.org/W2395557210","https://openalex.org/W121858127","https://openalex.org/W1972247471","https://openalex.org/W2811338992","https://openalex.org/W1999887682","https://openalex.org/W2120594828","https://openalex.org/W2361376203","https://openalex.org/W1482324242"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
