{"id":"https://openalex.org/W3000760918","doi":"https://doi.org/10.1007/978-3-030-34585-3_17","title":"Efficient and Settings-Free Calibration of Detailed Kinetic Metabolic Models with Enzyme Isoforms Characterization","display_name":"Efficient and Settings-Free Calibration of Detailed Kinetic Metabolic Models with Enzyme Isoforms Characterization","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3000760918","doi":"https://doi.org/10.1007/978-3-030-34585-3_17","mag":"3000760918"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-34585-3_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-34585-3_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021852862","display_name":"Niccol\u00f2 Totis","orcid":"https://orcid.org/0000-0002-4138-582X"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","IT"],"is_corresponding":false,"raw_author_name":"Niccol\u00f2 Totis","raw_affiliation_strings":["Bio- & Chemical Systems Technology, Reactor Engineering and Safety (CREaS), KU Leuven, Leuven, Belgium","Department of Computer Science, University of Torino, Torino, Italy"],"raw_orcid":"https://orcid.org/0000-0002-4138-582X","affiliations":[{"raw_affiliation_string":"Bio- & Chemical Systems Technology, Reactor Engineering and Safety (CREaS), KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]},{"raw_affiliation_string":"Department of Computer Science, University of Torino, Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056055676","display_name":"Andrea Tangherloni","orcid":"https://orcid.org/0000-0002-5856-4453"},"institutions":[{"id":"https://openalex.org/I21196054","display_name":"Wellcome/MRC Cambridge Stem Cell Institute","ror":"https://ror.org/05nz0zp31","country_code":"GB","type":"facility","lineage":["https://openalex.org/I21196054","https://openalex.org/I241749","https://openalex.org/I4210087105","https://openalex.org/I87048295","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I4210136633","display_name":"Stem Cell Institute","ror":"https://ror.org/02w7z1d65","country_code":"PA","type":"facility","lineage":["https://openalex.org/I4210136633"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["GB","IT","PA"],"is_corresponding":false,"raw_author_name":"Andrea Tangherloni","raw_affiliation_strings":["Department of Haematology, University of Cambridge, Cambridge, UK","Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milano, Italy","Medical Research Council Cambridge Stem Cell Institute, Cambridge, UK","Wellcome Trust Sanger Institute, Hinxton, UK"],"raw_orcid":"https://orcid.org/0000-0002-5856-4453","affiliations":[{"raw_affiliation_string":"Department of Haematology, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milano, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Medical Research Council Cambridge Stem Cell Institute, Cambridge, UK","institution_ids":["https://openalex.org/I21196054","https://openalex.org/I4210136633"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002392135","display_name":"Marco Beccuti","orcid":"https://orcid.org/0000-0001-6125-9460"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Beccuti","raw_affiliation_strings":["Department of Computer Science, University of Torino, Torino, Italy"],"raw_orcid":"https://orcid.org/0000-0001-6125-9460","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Torino, Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013723473","display_name":"Paolo Cazzaniga","orcid":"https://orcid.org/0000-0001-7780-0434"},"institutions":[{"id":"https://openalex.org/I11039511","display_name":"University of Bergamo","ror":"https://ror.org/02mbd5571","country_code":"IT","type":"education","lineage":["https://openalex.org/I11039511"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Cazzaniga","raw_affiliation_strings":["Department of Human and Social Sciences, University of Bergamo, Bergamo, Italy","SYSBIO.IT Centre for Systems Biology, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0001-7780-0434","affiliations":[{"raw_affiliation_string":"Department of Human and Social Sciences, University of Bergamo, Bergamo, Italy","institution_ids":["https://openalex.org/I11039511"]},{"raw_affiliation_string":"SYSBIO.IT Centre for Systems Biology, Milano, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043650939","display_name":"Marco S. Nobile","orcid":"https://orcid.org/0000-0002-7692-7203"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco S. Nobile","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milano, Italy","SYSBIO.IT Centre for Systems Biology, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0002-7692-7203","affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milano, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"SYSBIO.IT Centre for Systems Biology, Milano, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072712347","display_name":"Daniela Besozzi","orcid":"https://orcid.org/0000-0001-5532-3059"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniela Besozzi","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0001-5532-3059","affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milano, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003874484","display_name":"Marzio Pennisi","orcid":"https://orcid.org/0000-0003-0231-7653"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marzio Pennisi","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, Catania, Italy"],"raw_orcid":"https://orcid.org/0000-0003-0231-7653","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044340074","display_name":"Francesco Pappalardo","orcid":"https://orcid.org/0000-0003-1668-3320"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Francesco Pappalardo","raw_affiliation_strings":["Department of Drug Sciences, University of Catania, Catania, Italy"],"raw_orcid":"https://orcid.org/0000-0003-1668-3320","affiliations":[{"raw_affiliation_string":"Department of Drug Sciences, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5044340074"],"corresponding_institution_ids":["https://openalex.org/I39063666"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"187","last_page":"202"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11053","display_name":"Process Optimization and Integration","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7422772645950317},{"id":"https://openalex.org/keywords/parametric-statistics","display_name":"Parametric statistics","score":0.4860852062702179},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.4588601589202881},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.33305418491363525},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.32188037037849426},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11778643727302551}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7422772645950317},{"id":"https://openalex.org/C117251300","wikidata":"https://www.wikidata.org/wiki/Q1849855","display_name":"Parametric statistics","level":2,"score":0.4860852062702179},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.4588601589202881},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.33305418491363525},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.32188037037849426},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11778643727302551},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-030-34585-3_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-34585-3_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:aisberg.unibg.it:10446/160683","is_oa":false,"landing_page_url":"http://hdl.handle.net/10446/160683","pdf_url":null,"source":{"id":"https://openalex.org/S4377196347","display_name":"Aisberg (University of Bergamo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11039511","host_organization_name":"University of Bergamo","host_organization_lineage":["https://openalex.org/I11039511"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:boa.unimib.it:10281/414256","is_oa":false,"landing_page_url":"https://hdl.handle.net/10281/414256","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W190590157","https://openalex.org/W1547663768","https://openalex.org/W1659842140","https://openalex.org/W1727234225","https://openalex.org/W1918176521","https://openalex.org/W1976811972","https://openalex.org/W1989056897","https://openalex.org/W1989263028","https://openalex.org/W1996109622","https://openalex.org/W2010725039","https://openalex.org/W2012034410","https://openalex.org/W2017060799","https://openalex.org/W2024399152","https://openalex.org/W2038778951","https://openalex.org/W2043105642","https://openalex.org/W2051959027","https://openalex.org/W2062259223","https://openalex.org/W2077658674","https://openalex.org/W2079039822","https://openalex.org/W2101677491","https://openalex.org/W2109042184","https://openalex.org/W2129918713","https://openalex.org/W2132018771","https://openalex.org/W2136498480","https://openalex.org/W2144000913","https://openalex.org/W2146432221","https://openalex.org/W2146885685","https://openalex.org/W2148495082","https://openalex.org/W2149741353","https://openalex.org/W2152195021","https://openalex.org/W2156194072","https://openalex.org/W2167154952","https://openalex.org/W2167718560","https://openalex.org/W2169804422","https://openalex.org/W2170000328","https://openalex.org/W2466930524","https://openalex.org/W2471612384","https://openalex.org/W2490784103","https://openalex.org/W2558552004","https://openalex.org/W2604657987","https://openalex.org/W2612113311","https://openalex.org/W2613587040","https://openalex.org/W2751846886","https://openalex.org/W2805549187","https://openalex.org/W2897300524","https://openalex.org/W3100644055","https://openalex.org/W4212997115"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2280422768","https://openalex.org/W3143197806","https://openalex.org/W4252555497","https://openalex.org/W3121175838","https://openalex.org/W3016293053","https://openalex.org/W2401723157","https://openalex.org/W2952904874","https://openalex.org/W4389302559","https://openalex.org/W1690653314"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
