{"id":"https://openalex.org/W2969454370","doi":"https://doi.org/10.1007/978-3-030-29894-4_39","title":"Computational Prediction of Lysine Pupylation Sites in Prokaryotic Proteins Using Position Specific Scoring Matrix into Bigram for Feature Extraction","display_name":"Computational Prediction of Lysine Pupylation Sites in Prokaryotic Proteins Using Position Specific Scoring Matrix into Bigram for Feature Extraction","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2969454370","doi":"https://doi.org/10.1007/978-3-030-29894-4_39","mag":"2969454370"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-29894-4_39","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-29894-4_39","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028274650","display_name":"Vineet Singh","orcid":"https://orcid.org/0000-0002-1398-4980"},"institutions":[{"id":"https://openalex.org/I44666525","display_name":"University of the South Pacific","ror":"https://ror.org/008stv805","country_code":"FJ","type":"education","lineage":["https://openalex.org/I44666525"]}],"countries":["FJ"],"is_corresponding":true,"raw_author_name":"Vineet Singh","raw_affiliation_strings":["Faculty of Science Technology and Environment, University of the South Pacific, Suva, Fiji"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Science Technology and Environment, University of the South Pacific, Suva, Fiji","institution_ids":["https://openalex.org/I44666525"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025400322","display_name":"Alok Sharma","orcid":"https://orcid.org/0000-0002-7668-3501"},"institutions":[{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I44666525","display_name":"University of the South Pacific","ror":"https://ror.org/008stv805","country_code":"FJ","type":"education","lineage":["https://openalex.org/I44666525"]}],"countries":["FJ","JP"],"is_corresponding":true,"raw_author_name":"Alok Sharma","raw_affiliation_strings":["CREST, JST, Tokyo, 113-8510, Japan","Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan","Institute for Integrated and Intelligent Systems, Grifth University, Brisbane, QLD, 4111, Australia","Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Kanagawa, Japan","RIKEN Center for Integrative Medical Sciences, Yokohama, Japan","School of Engineering and Physics, Faculty of Science Technology and Environment, University of the South Pacific, Suva, Fiji"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I125602781"]},{"raw_affiliation_string":"Institute for Integrated and Intelligent Systems, Grifth University, Brisbane, QLD, 4111, Australia","institution_ids":[]},{"raw_affiliation_string":"Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Japan","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"School of Engineering and Physics, Faculty of Science Technology and Environment, University of the South Pacific, Suva, Fiji","institution_ids":["https://openalex.org/I44666525"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058936758","display_name":"Abel Chandra","orcid":"https://orcid.org/0000-0001-8497-028X"},"institutions":[{"id":"https://openalex.org/I44666525","display_name":"University of the South Pacific","ror":"https://ror.org/008stv805","country_code":"FJ","type":"education","lineage":["https://openalex.org/I44666525"]}],"countries":["FJ"],"is_corresponding":false,"raw_author_name":"Abel Chandra","raw_affiliation_strings":["School of Engineering and Physics, Faculty of Science Technology and Environment, University of the South Pacific, Suva, Fiji"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Engineering and Physics, Faculty of Science Technology and Environment, University of the South Pacific, Suva, Fiji","institution_ids":["https://openalex.org/I44666525"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068034214","display_name":"Abdollah Dehzangi","orcid":"https://orcid.org/0000-0001-8577-0271"},"institutions":[{"id":"https://openalex.org/I83909951","display_name":"Morgan State University","ror":"https://ror.org/017d8gk22","country_code":"US","type":"education","lineage":["https://openalex.org/I83909951"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abdollah Dehzangi","raw_affiliation_strings":["Department of Computer Science, Morgan State University, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Morgan State University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I83909951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053070089","display_name":"Daichi Shigemizu","orcid":"https://orcid.org/0000-0002-4412-0552"},"institutions":[{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I4210151238","display_name":"Center for Genomic Science","ror":"https://ror.org/04xbkmk86","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210151238"]},{"id":"https://openalex.org/I4210160102","display_name":"National Center for Geriatrics and Gerontology","ror":"https://ror.org/05h0rw812","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210160102"]}],"countries":["IT","JP"],"is_corresponding":false,"raw_author_name":"Daichi Shigemizu","raw_affiliation_strings":["CREST, JST, Tokyo, 113-8510, Japan","Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan","Division of Genomic Medicine, Medical Genome Center, National Center for Geriatrics and Gerontology, Obu, 474-8511, Japan","Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Kanagawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I125602781"]},{"raw_affiliation_string":"Division of Genomic Medicine, Medical Genome Center, National Center for Geriatrics and Gerontology, Obu, 474-8511, Japan","institution_ids":["https://openalex.org/I4210151238","https://openalex.org/I4210160102"]},{"raw_affiliation_string":"Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049989071","display_name":"Tatsuhiko Tsunoda","orcid":"https://orcid.org/0000-0002-5439-7918"},"institutions":[{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuhiko Tsunoda","raw_affiliation_strings":["CREST, JST, Tokyo, 113-8510, Japan","Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan","Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Kanagawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I125602781"]},{"raw_affiliation_string":"Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210150921"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5025400322","https://openalex.org/A5028274650"],"corresponding_institution_ids":["https://openalex.org/I125602781","https://openalex.org/I4210086780","https://openalex.org/I4210150921","https://openalex.org/I44666525"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"488","last_page":"500"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bigram","display_name":"Bigram","score":0.8087388277053833},{"id":"https://openalex.org/keywords/lysine","display_name":"Lysine","score":0.7500302791595459},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5388045310974121},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4551304876804352},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41797754168510437},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2653925120830536},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.25602465867996216},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25469937920570374},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2519310712814331}],"concepts":[{"id":"https://openalex.org/C108757681","wikidata":"https://www.wikidata.org/wiki/Q2773912","display_name":"Bigram","level":3,"score":0.8087388277053833},{"id":"https://openalex.org/C2776016237","wikidata":"https://www.wikidata.org/wiki/Q178430","display_name":"Lysine","level":3,"score":0.7500302791595459},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5388045310974121},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4551304876804352},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41797754168510437},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2653925120830536},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.25602465867996216},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25469937920570374},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2519310712814331},{"id":"https://openalex.org/C137546455","wikidata":"https://www.wikidata.org/wiki/Q3213474","display_name":"Trigram","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-030-29894-4_39","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-29894-4_39","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/393004","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/393004","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference output"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W207309682","https://openalex.org/W653645961","https://openalex.org/W1556218031","https://openalex.org/W1596947964","https://openalex.org/W1971057981","https://openalex.org/W1975173458","https://openalex.org/W1975271133","https://openalex.org/W1984148780","https://openalex.org/W1989064680","https://openalex.org/W1991199546","https://openalex.org/W1994526268","https://openalex.org/W2001571840","https://openalex.org/W2028161249","https://openalex.org/W2034070267","https://openalex.org/W2044163830","https://openalex.org/W2044762720","https://openalex.org/W2046534253","https://openalex.org/W2052425301","https://openalex.org/W2062692445","https://openalex.org/W2066476512","https://openalex.org/W2066507577","https://openalex.org/W2074196504","https://openalex.org/W2079483988","https://openalex.org/W2080915318","https://openalex.org/W2096749822","https://openalex.org/W2107272621","https://openalex.org/W2109268993","https://openalex.org/W2119697416","https://openalex.org/W2125463451","https://openalex.org/W2130479394","https://openalex.org/W2142529984","https://openalex.org/W2147462290","https://openalex.org/W2153635508","https://openalex.org/W2155365779","https://openalex.org/W2156125289","https://openalex.org/W2209329607","https://openalex.org/W2264362083","https://openalex.org/W2278741011","https://openalex.org/W2395084017","https://openalex.org/W2490135372","https://openalex.org/W2520998691","https://openalex.org/W2601860898","https://openalex.org/W2611495100","https://openalex.org/W2737510823","https://openalex.org/W2750857942","https://openalex.org/W2767496117","https://openalex.org/W2784470720","https://openalex.org/W2790664092","https://openalex.org/W2904418950","https://openalex.org/W3145506661"],"related_works":["https://openalex.org/W1846229318","https://openalex.org/W1970499440","https://openalex.org/W2910941296","https://openalex.org/W1993666136","https://openalex.org/W2969454370","https://openalex.org/W3205836607","https://openalex.org/W4285142023","https://openalex.org/W3011860286","https://openalex.org/W2863773080","https://openalex.org/W2149993519"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}