{"id":"https://openalex.org/W2945860402","doi":"https://doi.org/10.1007/978-3-030-25540-4_28","title":"Semi-quantitative Abstraction and Analysis of Chemical Reaction Networks","display_name":"Semi-quantitative Abstraction and Analysis of Chemical Reaction Networks","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2945860402","doi":"https://doi.org/10.1007/978-3-030-25540-4_28","mag":"2945860402"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-25540-4_28","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-030-25540-4_28","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-030-25540-4_28.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-030-25540-4_28.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001379903","display_name":"Milan \u010ce\u0161ka","orcid":"https://orcid.org/0000-0002-0300-9727"},"institutions":[{"id":"https://openalex.org/I60587646","display_name":"Brno University of Technology","ror":"https://ror.org/03613d656","country_code":"CZ","type":"education","lineage":["https://openalex.org/I60587646"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Milan \u010ce\u0161ka","raw_affiliation_strings":["Brno University of Technology, FIT, IT4I Centre of Excellence, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Brno University of Technology, FIT, IT4I Centre of Excellence, Brno, Czech Republic","institution_ids":["https://openalex.org/I60587646"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074485601","display_name":"Jan K\u0159et\u00ednsk\u00fd","orcid":"https://orcid.org/0000-0002-8122-2881"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan K\u0159et\u00ednsk\u00fd","raw_affiliation_strings":["Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001379903"],"corresponding_institution_ids":["https://openalex.org/I60587646"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":{"value":5000,"currency":"EUR","value_usd":5392},"fwci":0.3239,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.57392553,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"475","last_page":"496"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.7297062277793884},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7190450429916382},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6939677596092224},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5582883954048157},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5466537475585938},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.499265193939209},{"id":"https://openalex.org/keywords/contrast","display_name":"Contrast (vision)","score":0.4430548846721649},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.36670446395874023},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3491479754447937},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2659767270088196}],"concepts":[{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.7297062277793884},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7190450429916382},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6939677596092224},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5582883954048157},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5466537475585938},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.499265193939209},{"id":"https://openalex.org/C2776502983","wikidata":"https://www.wikidata.org/wiki/Q690182","display_name":"Contrast (vision)","level":2,"score":0.4430548846721649},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.36670446395874023},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3491479754447937},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2659767270088196},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-030-25540-4_28","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-030-25540-4_28","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-030-25540-4_28.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:arXiv.org:1905.09914","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.09914","pdf_url":"https://arxiv.org/pdf/1905.09914","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2945860402","is_oa":true,"landing_page_url":"https://arxiv.org/abs/1905.09914","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1905.09914","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1905.09914","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1007/978-3-030-25540-4_28","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-030-25540-4_28","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-030-25540-4_28.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3457869518","display_name":"Automata for Decision Procedures and Verification","funder_award_id":"GA19-24397S","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G3846544520","display_name":null,"funder_award_id":"GA19-","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G853342598","display_name":null,"funder_award_id":"LQ1602","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2945860402.pdf","grobid_xml":"https://content.openalex.org/works/W2945860402.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1498432697","https://openalex.org/W1535517661","https://openalex.org/W1604167937","https://openalex.org/W1902630711","https://openalex.org/W1966963894","https://openalex.org/W1968402813","https://openalex.org/W1973890190","https://openalex.org/W1976268573","https://openalex.org/W1987073190","https://openalex.org/W1988123909","https://openalex.org/W1993112505","https://openalex.org/W1996109622","https://openalex.org/W2000804241","https://openalex.org/W2002083262","https://openalex.org/W2018670096","https://openalex.org/W2019768978","https://openalex.org/W2039331233","https://openalex.org/W2066594542","https://openalex.org/W2071747231","https://openalex.org/W2101620974","https://openalex.org/W2101645257","https://openalex.org/W2102787760","https://openalex.org/W2106001218","https://openalex.org/W2108886305","https://openalex.org/W2116620527","https://openalex.org/W2116994683","https://openalex.org/W2118039525","https://openalex.org/W2123429492","https://openalex.org/W2126395278","https://openalex.org/W2126794261","https://openalex.org/W2127660420","https://openalex.org/W2134272947","https://openalex.org/W2137904930","https://openalex.org/W2138153242","https://openalex.org/W2149827235","https://openalex.org/W2155418451","https://openalex.org/W2157239333","https://openalex.org/W2167244112","https://openalex.org/W2167718560","https://openalex.org/W2171282796","https://openalex.org/W2395749546","https://openalex.org/W2517630823","https://openalex.org/W2752491749","https://openalex.org/W2962738471","https://openalex.org/W2963834876","https://openalex.org/W2966097663","https://openalex.org/W3008437073","https://openalex.org/W3099488856","https://openalex.org/W6685251809"],"related_works":["https://openalex.org/W2966097663","https://openalex.org/W3022539837","https://openalex.org/W2612418406","https://openalex.org/W2982535540","https://openalex.org/W3039407504","https://openalex.org/W2226451125","https://openalex.org/W2405672565","https://openalex.org/W2770082463","https://openalex.org/W2527981850","https://openalex.org/W2557991697","https://openalex.org/W2625148991","https://openalex.org/W2077259222","https://openalex.org/W291264158","https://openalex.org/W2539341237","https://openalex.org/W3007908666","https://openalex.org/W1993842818","https://openalex.org/W1541133920","https://openalex.org/W3037545388","https://openalex.org/W2794291063","https://openalex.org/W2945524222"],"abstract_inverted_index":{"Analysis":[0],"of":[1,34,82,93],"large":[2],"continuous-time":[3],"stochastic":[4],"systems":[5],"is":[6],"a":[7,27,59,98],"computationally":[8],"intensive":[9],"task.":[10],"In":[11],"this":[12],"work":[13],"we":[14,96,103],"focus":[15],"on":[16,79,109],"population":[17,55],"models":[18],"arising":[19],"from":[20,112],"chemical":[21],"reaction":[22],"networks":[23],"(CRNs),":[24],"which":[25,102],"play":[26],"fundamental":[28],"role":[29],"in":[30,91,121],"analysis":[31],"and":[32,74,85,134],"design":[33],"biochemical":[35],"systems.":[36],"Many":[37],"relevant":[38],"CRNs":[39,111],"are":[40],"particularly":[41],"challenging":[42],"for":[43],"existing":[44],"techniques":[45],"due":[46],"to":[47,65,69,123],"complex":[48,110],"dynamics":[49],"including":[50],"stochasticity,":[51],"stiffness":[52],"or":[53],"multimodal":[54],"distributions.":[56],"We":[57],"propose":[58],"novel":[60],"approach":[61,115],"allowing":[62],"not":[63],"only":[64,90],"predict,":[66],"but":[67,120],"also":[68],"explain":[70],"both":[71],"the":[72,83,117,124],"transient":[73],"steady-state":[75],"behaviour.":[76],"It":[77],"focuses":[78],"qualitative":[80],"description":[81],"behaviour":[84],"aims":[86],"at":[87],"quantitative":[88],"precision":[89],"orders":[92],"magnitude.":[94],"First":[95],"build":[97],"compact":[99],"understandable":[100],"model,":[101],"then":[104],"crudely":[105],"analyse.":[106],"As":[107],"demonstrated":[108],"literature,":[113],"our":[114],"reproduces":[116],"known":[118],"results,":[119],"contrast":[122],"state-of-the-art":[125],"methods,":[126],"it":[127],"runs":[128],"with":[129],"virtually":[130],"no":[131],"computational":[132],"cost":[133],"thus":[135],"offers":[136],"unprecedented":[137],"scalability.":[138]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
