{"id":"https://openalex.org/W2943457526","doi":"https://doi.org/10.1007/978-3-030-17938-0_5","title":"De novo Transcriptome Assembly of Solea senegalensis v5.0 Using TransFlow","display_name":"De novo Transcriptome Assembly of Solea senegalensis v5.0 Using TransFlow","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2943457526","doi":"https://doi.org/10.1007/978-3-030-17938-0_5","mag":"2943457526"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-17938-0_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-17938-0_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088333668","display_name":"J. Caballero","orcid":"https://orcid.org/0000-0002-1821-5742"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 C\u00f3rdoba-Caballero","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Universidad de M\u00e1laga, Malaga, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Universidad de M\u00e1laga, Malaga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038138862","display_name":"Pedro Seoane","orcid":"https://orcid.org/0000-0002-3020-1415"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pedro Seoane-Zonjic","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Universidad de M\u00e1laga, Malaga, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Universidad de M\u00e1laga, Malaga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062765341","display_name":"Manuel Manchado","orcid":"https://orcid.org/0000-0002-4584-4878"},"institutions":[{"id":"https://openalex.org/I4210117122","display_name":"Consejer\u00eda de Agricultura, Pesca, Agua y Desarrollo Rural","ror":"https://ror.org/0269h3m05","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210117122","https://openalex.org/I918821925"]},{"id":"https://openalex.org/I4210129002","display_name":"Andalusian Institute of Agricultural and Fisheries Research and Training","ror":"https://ror.org/02w21g732","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210129002","https://openalex.org/I918821925"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuel Manchado","raw_affiliation_strings":["IFAPA Centro El Toru\u00f1o, Consejer\u00eda de Agricultura y Pesca, 11500, El Puerto de Santa Mar\u00eda, Cadiz, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IFAPA Centro El Toru\u00f1o, Consejer\u00eda de Agricultura y Pesca, 11500, El Puerto de Santa Mar\u00eda, Cadiz, Spain","institution_ids":["https://openalex.org/I4210117122","https://openalex.org/I4210129002"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056017872","display_name":"M. Gonzalo Claros","orcid":"https://orcid.org/0000-0002-0112-3550"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"M. Gonzalo Claros","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Universidad de M\u00e1laga, Malaga, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Universidad de M\u00e1laga, Malaga, Spain","institution_ids":["https://openalex.org/I82767444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5056017872"],"corresponding_institution_ids":["https://openalex.org/I82767444"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.6728,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.82964655,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"48","last_page":"59"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10506","display_name":"Aquaculture disease management and microbiota","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.8072080016136169},{"id":"https://openalex.org/keywords/de-novo-transcriptome-assembly","display_name":"De novo transcriptome assembly","score":0.7966655492782593},{"id":"https://openalex.org/keywords/illumina-dye-sequencing","display_name":"Illumina dye sequencing","score":0.6695893406867981},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6190395355224609},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5552386045455933},{"id":"https://openalex.org/keywords/flatfish","display_name":"Flatfish","score":0.5154898762702942},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5116803646087646},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4735633134841919},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.33415156602859497},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2741234302520752},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24217906594276428},{"id":"https://openalex.org/keywords/fish-actinopterygii","display_name":"Fish <Actinopterygii>","score":0.12073755264282227},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06740093231201172}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.8072080016136169},{"id":"https://openalex.org/C50489715","wikidata":"https://www.wikidata.org/wiki/Q5244960","display_name":"De novo transcriptome assembly","level":5,"score":0.7966655492782593},{"id":"https://openalex.org/C106337198","wikidata":"https://www.wikidata.org/wiki/Q13564012","display_name":"Illumina dye sequencing","level":4,"score":0.6695893406867981},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6190395355224609},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5552386045455933},{"id":"https://openalex.org/C2779950014","wikidata":"https://www.wikidata.org/wiki/Q59577","display_name":"Flatfish","level":3,"score":0.5154898762702942},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5116803646087646},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4735633134841919},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.33415156602859497},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2741234302520752},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24217906594276428},{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.12073755264282227},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06740093231201172},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-17938-0_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-17938-0_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.7699999809265137}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1987545661","https://openalex.org/W2099048062","https://openalex.org/W2108234281","https://openalex.org/W2127059936","https://openalex.org/W2156125289","https://openalex.org/W2170551349","https://openalex.org/W2613065646","https://openalex.org/W2741819837","https://openalex.org/W2745167386","https://openalex.org/W2901306713","https://openalex.org/W2962658116","https://openalex.org/W4300009529"],"related_works":["https://openalex.org/W2049364822","https://openalex.org/W1021674602","https://openalex.org/W2554708349","https://openalex.org/W4229631748","https://openalex.org/W2252564528","https://openalex.org/W179954989","https://openalex.org/W2463742850","https://openalex.org/W2197775915","https://openalex.org/W4283398782","https://openalex.org/W4253460633"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
