{"id":"https://openalex.org/W2907291843","doi":"https://doi.org/10.1007/978-3-030-17297-8_5","title":"Using State Space Exploration to Determine How Gene Regulatory Networks Constrain Mutation Order in Cancer Evolution","display_name":"Using State Space Exploration to Determine How Gene Regulatory Networks Constrain Mutation Order in Cancer Evolution","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2907291843","doi":"https://doi.org/10.1007/978-3-030-17297-8_5","mag":"2907291843"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-17297-8_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-17297-8_5","pdf_url":null,"source":{"id":"https://openalex.org/S4210239436","display_name":"Computational biology","issn_l":"1568-2684","issn":["1568-2684","2662-2432"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320108","host_organization_name":"Springer Nature (Netherlands)","host_organization_lineage":["https://openalex.org/P4310320108","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature (Netherlands)","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.17863/cam.42094","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032426555","display_name":"Matthew Clarke","orcid":"https://orcid.org/0009-0002-7387-3286"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Matthew A. Clarke","raw_affiliation_strings":["Department of Biochemistry, University of Cambridge, Cambridge, UK","Department of Biochemistry; University of Cambridge; Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Biochemistry; University of Cambridge; Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056852977","display_name":"Steven Woodhouse","orcid":"https://orcid.org/0000-0002-8605-2762"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Woodhouse","raw_affiliation_strings":["Department of Genetics, University of Pennsylvania, Philadelphia, PA, USA","Department of Genetics, University of Pennsylvania, Philadelphia, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Genetics, University of Pennsylvania, Philadelphia, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045161607","display_name":"Nir Piterman","orcid":"https://orcid.org/0000-0002-8242-5357"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nir Piterman","raw_affiliation_strings":["Department of Computer Science, University of Leicester, Leicester, UK","Department of Computer Science University of Leicester Leicester UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"Department of Computer Science University of Leicester Leicester UK","institution_ids":["https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027490511","display_name":"Benjamin A. Hall","orcid":"https://orcid.org/0000-0003-0355-2946"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I4210089716","display_name":"MRC Cancer Unit","ror":"https://ror.org/015nth639","country_code":"GB","type":"facility","lineage":["https://openalex.org/I241749","https://openalex.org/I4210087105","https://openalex.org/I4210087105","https://openalex.org/I4210089716","https://openalex.org/I4210106569","https://openalex.org/I90344618","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Benjamin A. Hall","raw_affiliation_strings":["MRC Cancer Unit, University of Cambridge, Cambridge, UK","MRC Cancer Unit University of Cambridge  Cambridge UK"],"affiliations":[{"raw_affiliation_string":"MRC Cancer Unit, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I4210089716","https://openalex.org/I241749"]},{"raw_affiliation_string":"MRC Cancer Unit University of Cambridge  Cambridge UK","institution_ids":["https://openalex.org/I4210089716","https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066189305","display_name":"Jasmin Fisher","orcid":"https://orcid.org/0000-0003-4477-9047"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I4210164937","display_name":"Microsoft Research (United Kingdom)","ror":"https://ror.org/05k87vq12","country_code":"GB","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210164937"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jasmin Fisher","raw_affiliation_strings":["Department of Biochemistry, University of Cambridge, Cambridge, UK","Microsoft Research Cambridge, Cambridge, UK","Department of Biochemistry; University of Cambridge; Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Microsoft Research Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I4210164937"]},{"raw_affiliation_string":"Department of Biochemistry; University of Cambridge; Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5032426555"],"corresponding_institution_ids":["https://openalex.org/I241749"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.01784959,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"133","last_page":"153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6937872767448425},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.6412938237190247},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6143386363983154},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6077036261558533},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5380961298942566},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5241304039955139},{"id":"https://openalex.org/keywords/clone","display_name":"clone (Java method)","score":0.5028309226036072},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.43387794494628906},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.42894062399864197},{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.4250606894493103},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.18151214718818665}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6937872767448425},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.6412938237190247},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6143386363983154},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6077036261558533},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5380961298942566},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5241304039955139},{"id":"https://openalex.org/C81089528","wikidata":"https://www.wikidata.org/wiki/Q5134986","display_name":"clone (Java method)","level":3,"score":0.5028309226036072},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.43387794494628906},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.42894062399864197},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.4250606894493103},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18151214718818665},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-030-17297-8_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-17297-8_5","pdf_url":null,"source":{"id":"https://openalex.org/S4210239436","display_name":"Computational biology","issn_l":"1568-2684","issn":["1568-2684","2662-2432"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320108","host_organization_name":"Springer Nature (Netherlands)","host_organization_lineage":["https://openalex.org/P4310320108","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature (Netherlands)","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology","raw_type":"book-chapter"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/295017","is_oa":false,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/295017","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Book chapter"},{"id":"doi:10.17863/cam.42094","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.42094","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"chapter"},{"id":"mag:2907291843","is_oa":false,"landing_page_url":"https://www.microsoft.com/en-us/research/publication/using-state-space-exploration-to-determine-how-gene-regulatory-networks-constrain-mutation-order-in-cancer-evolution/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.17863/cam.42094","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.42094","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"chapter"},"sustainable_development_goals":[{"score":0.7699999809265137,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3132704175","display_name":null,"funder_award_id":"MR/N501876/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G5918792225","display_name":null,"funder_award_id":"MR/S000216/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7011121986","display_name":null,"funder_award_id":"MC_UU_12022/9","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W250128136","https://openalex.org/W1526705543","https://openalex.org/W1572656384","https://openalex.org/W1579045998","https://openalex.org/W1692777765","https://openalex.org/W1757407923","https://openalex.org/W1788683850","https://openalex.org/W1861891407","https://openalex.org/W1906271222","https://openalex.org/W1956871134","https://openalex.org/W1967203013","https://openalex.org/W1968958091","https://openalex.org/W1973568247","https://openalex.org/W1985707582","https://openalex.org/W1991083334","https://openalex.org/W1994930469","https://openalex.org/W1999463736","https://openalex.org/W2001258296","https://openalex.org/W2004834404","https://openalex.org/W2010873488","https://openalex.org/W2011053154","https://openalex.org/W2011957420","https://openalex.org/W2023560061","https://openalex.org/W2027779909","https://openalex.org/W2030593198","https://openalex.org/W2041888522","https://openalex.org/W2052705131","https://openalex.org/W2058166031","https://openalex.org/W2063382533","https://openalex.org/W2066679661","https://openalex.org/W2080267935","https://openalex.org/W2081948388","https://openalex.org/W2084780592","https://openalex.org/W2085770388","https://openalex.org/W2090200585","https://openalex.org/W2093144236","https://openalex.org/W2095617425","https://openalex.org/W2108129909","https://openalex.org/W2109991075","https://openalex.org/W2117231993","https://openalex.org/W2117692326","https://openalex.org/W2122902176","https://openalex.org/W2123431502","https://openalex.org/W2124820482","https://openalex.org/W2125987139","https://openalex.org/W2129288227","https://openalex.org/W2146142395","https://openalex.org/W2148819091","https://openalex.org/W2148930557","https://openalex.org/W2157423592","https://openalex.org/W2165045190","https://openalex.org/W2207517959","https://openalex.org/W2235828289","https://openalex.org/W2278992199","https://openalex.org/W2416180323","https://openalex.org/W2466657174","https://openalex.org/W2515472395","https://openalex.org/W2531887049","https://openalex.org/W2553246368","https://openalex.org/W2560743692","https://openalex.org/W2566426512","https://openalex.org/W2579382924","https://openalex.org/W2798041799","https://openalex.org/W4237394719"],"related_works":["https://openalex.org/W2955516635","https://openalex.org/W1998759645","https://openalex.org/W1989795110","https://openalex.org/W1994124536","https://openalex.org/W2970136167","https://openalex.org/W2165344941","https://openalex.org/W2019136808","https://openalex.org/W1422717320","https://openalex.org/W2147851100","https://openalex.org/W2020176076","https://openalex.org/W1982348295","https://openalex.org/W3103983128","https://openalex.org/W2909337804","https://openalex.org/W1967141690","https://openalex.org/W2112963402","https://openalex.org/W2887733858","https://openalex.org/W3045630047","https://openalex.org/W1978319180","https://openalex.org/W2150182123","https://openalex.org/W3018337700"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
