{"id":"https://openalex.org/W2949600294","doi":"https://doi.org/10.1007/978-3-030-17083-7_14","title":"De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality-Value Based Algorithm","display_name":"De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality-Value Based Algorithm","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2949600294","doi":"https://doi.org/10.1007/978-3-030-17083-7_14","mag":"2949600294"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-17083-7_14","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-17083-7_14","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082939519","display_name":"Kristoffer Sahlin","orcid":"https://orcid.org/0000-0001-7378-2320"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kristoffer Sahlin","raw_affiliation_strings":["Department of Computer Science and Engineering, Pennsylvania State University, State College, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Pennsylvania State University, State College, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066909672","display_name":"Paul Medvedev","orcid":"https://orcid.org/0000-0003-3143-594X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I4210127906","display_name":"University Orthopedics Center","ror":"https://ror.org/03khf7306","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210127906"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Medvedev","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Pennsylvania State University, State College, USA","Department of Biochemistry and Molecular Biology, Pennsylvania State University, State College, USA","Department of Computer Science and Engineering, Pennsylvania State University, State College, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Pennsylvania State University, State College, USA","institution_ids":["https://openalex.org/I4210127906"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Pennsylvania State University, State College, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Pennsylvania State University, State College, USA","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5082939519"],"corresponding_institution_ids":["https://openalex.org/I130769515"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":7.1153,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.97935877,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"227","last_page":"242"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8203767538070679},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7562541961669922},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7352423071861267},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7288080453872681},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.5360831022262573},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5125625133514404},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.4482201337814331},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4339950680732727},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23690065741539001},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.19443756341934204},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10135966539382935},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09616643190383911},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09107056260108948}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8203767538070679},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7562541961669922},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7352423071861267},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7288080453872681},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.5360831022262573},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5125625133514404},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.4482201337814331},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4339950680732727},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23690065741539001},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.19443756341934204},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10135966539382935},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09616643190383911},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09107056260108948},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-17083-7_14","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-17083-7_14","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W958219903","https://openalex.org/W1987820419","https://openalex.org/W2024072609","https://openalex.org/W2041126213","https://openalex.org/W2070455968","https://openalex.org/W2105765411","https://openalex.org/W2110734043","https://openalex.org/W2116699248","https://openalex.org/W2116913753","https://openalex.org/W2120096459","https://openalex.org/W2124351063","https://openalex.org/W2142167651","https://openalex.org/W2144560237","https://openalex.org/W2145853890","https://openalex.org/W2149616469","https://openalex.org/W2150483253","https://openalex.org/W2156125289","https://openalex.org/W2164883482","https://openalex.org/W2170747616","https://openalex.org/W2260037449","https://openalex.org/W2415697913","https://openalex.org/W2597262405","https://openalex.org/W2602978558","https://openalex.org/W2608509736","https://openalex.org/W2611726225","https://openalex.org/W2617273082","https://openalex.org/W2688344404","https://openalex.org/W2747802896","https://openalex.org/W2751702521","https://openalex.org/W2751810028","https://openalex.org/W2789843538","https://openalex.org/W2802684988","https://openalex.org/W2805146307","https://openalex.org/W2893222042","https://openalex.org/W2898449026","https://openalex.org/W2899345312","https://openalex.org/W2899681763","https://openalex.org/W2950150251","https://openalex.org/W2950214184","https://openalex.org/W2950589160","https://openalex.org/W2950954328","https://openalex.org/W2952080813","https://openalex.org/W2953008890","https://openalex.org/W2953020124","https://openalex.org/W4235169531"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W3183948672","https://openalex.org/W3173606202","https://openalex.org/W3110381201","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2758277628","https://openalex.org/W1531601525","https://openalex.org/W2011430815","https://openalex.org/W4321606653"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":5}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
