{"id":"https://openalex.org/W2891834788","doi":"https://doi.org/10.1007/978-3-030-00825-3_16","title":"Deep Learning the Protein Function in Protein Interaction Networks","display_name":"Deep Learning the Protein Function in Protein Interaction Networks","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2891834788","doi":"https://doi.org/10.1007/978-3-030-00825-3_16","mag":"2891834788"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-00825-3_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-00825-3_16","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071856573","display_name":"Kire Trivodaliev","orcid":"https://orcid.org/0000-0002-7350-9583"},"institutions":[{"id":"https://openalex.org/I76245029","display_name":"Saints Cyril and Methodius University of Skopje","ror":"https://ror.org/02wk2vx54","country_code":"MK","type":"education","lineage":["https://openalex.org/I76245029"]}],"countries":["MK"],"is_corresponding":true,"raw_author_name":"Kire Trivodaliev","raw_affiliation_strings":["Ss. Cyril and Methodius University, Skopje, Macedonia"],"affiliations":[{"raw_affiliation_string":"Ss. Cyril and Methodius University, Skopje, Macedonia","institution_ids":["https://openalex.org/I76245029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057031908","display_name":"Martin Josifoski","orcid":null},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Martin Josifoski","raw_affiliation_strings":["Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne EPFL, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne EPFL, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014847368","display_name":"Slobodan Kalajdziski","orcid":"https://orcid.org/0000-0003-3373-8637"},"institutions":[{"id":"https://openalex.org/I76245029","display_name":"Saints Cyril and Methodius University of Skopje","ror":"https://ror.org/02wk2vx54","country_code":"MK","type":"education","lineage":["https://openalex.org/I76245029"]}],"countries":["MK"],"is_corresponding":false,"raw_author_name":"Slobodan Kalajdziski","raw_affiliation_strings":["Faculty of Computer Science and Engineering, Saints Cyril and Methodius University of Skopje, Skopje, Macedonia","Ss. Cyril and Methodius University, Skopje, Macedonia"],"affiliations":[{"raw_affiliation_string":"Faculty of Computer Science and Engineering, Saints Cyril and Methodius University of Skopje, Skopje, Macedonia","institution_ids":["https://openalex.org/I76245029"]},{"raw_affiliation_string":"Ss. Cyril and Methodius University, Skopje, Macedonia","institution_ids":["https://openalex.org/I76245029"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5071856573"],"corresponding_institution_ids":["https://openalex.org/I76245029"],"apc_list":null,"apc_paid":null,"fwci":0.7963,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.7290624,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"185","last_page":"197"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6753923296928406},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.5785037279129028},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5409420728683472},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5330801010131836},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5283511281013489},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5232138633728027},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5078497529029846},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.49171239137649536},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.4670468866825104},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4470776319503784},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.43831250071525574},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4272541403770447},{"id":"https://openalex.org/keywords/directed-acyclic-graph","display_name":"Directed acyclic graph","score":0.4269738793373108},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.42076370120048523},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3758149743080139},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3441506624221802},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.30007895827293396},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07992395758628845}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6753923296928406},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.5785037279129028},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5409420728683472},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5330801010131836},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5283511281013489},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5232138633728027},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5078497529029846},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.49171239137649536},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.4670468866825104},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4470776319503784},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.43831250071525574},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4272541403770447},{"id":"https://openalex.org/C74197172","wikidata":"https://www.wikidata.org/wiki/Q1195339","display_name":"Directed acyclic graph","level":2,"score":0.4269738793373108},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.42076370120048523},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3758149743080139},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3441506624221802},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.30007895827293396},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07992395758628845},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-030-00825-3_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-00825-3_16","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W116953429","https://openalex.org/W1590721879","https://openalex.org/W1614298861","https://openalex.org/W1888005072","https://openalex.org/W1982732700","https://openalex.org/W1985817649","https://openalex.org/W1990223774","https://openalex.org/W2011340259","https://openalex.org/W2012336263","https://openalex.org/W2037601806","https://openalex.org/W2056092504","https://openalex.org/W2076723453","https://openalex.org/W2076743129","https://openalex.org/W2090766471","https://openalex.org/W2090891622","https://openalex.org/W2097391022","https://openalex.org/W2105962550","https://openalex.org/W2108892946","https://openalex.org/W2119027485","https://openalex.org/W2121893605","https://openalex.org/W2125282516","https://openalex.org/W2154851992","https://openalex.org/W2160556205","https://openalex.org/W2171403830","https://openalex.org/W2227395312","https://openalex.org/W2242161203","https://openalex.org/W2289766693","https://openalex.org/W2393319904","https://openalex.org/W2412435151","https://openalex.org/W2426363820","https://openalex.org/W2550301226","https://openalex.org/W2604808360","https://openalex.org/W2962756421","https://openalex.org/W3104097132","https://openalex.org/W3105705953"],"related_works":["https://openalex.org/W3132344302","https://openalex.org/W2094822546","https://openalex.org/W4388708026","https://openalex.org/W1969080446","https://openalex.org/W3108941781","https://openalex.org/W1578069856","https://openalex.org/W2082380079","https://openalex.org/W2889660853","https://openalex.org/W1977065177","https://openalex.org/W1797688090"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
