{"id":"https://openalex.org/W2889866620","doi":"https://doi.org/10.1007/978-3-030-00265-7_14","title":"WEBRSIM: A Web-Based Reaction Systems Simulator","display_name":"WEBRSIM: A Web-Based Reaction Systems Simulator","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2889866620","doi":"https://doi.org/10.1007/978-3-030-00265-7_14","mag":"2889866620"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-00265-7_14","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-00265-7_14","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021072417","display_name":"Sergiu Ivanov","orcid":"https://orcid.org/0000-0002-1537-6508"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sergiu Ivanov","raw_affiliation_strings":["IBISC, Universit\u00e9 \u00c9vry, Universit\u00e9 Paris-Saclay, \u00c9vry, France","Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBISC, Universit\u00e9 \u00c9vry, Universit\u00e9 Paris-Saclay, \u00c9vry, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]},{"raw_affiliation_string":"Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes","institution_ids":["https://openalex.org/I4210107733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079232711","display_name":"Vladimir Rogojin","orcid":null},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Vladimir Rogojin","raw_affiliation_strings":["Computational Biomodeling Laboratory, Turku Centre for Computer Science, Turku, Finland","Department of Information Technologies, \u00c5bo Akademi University, Agora, Domkyrkotorget 3, Turku, 20500, Finland","Computational Biomodeling Laboratory","Department of Information Technologies"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biomodeling Laboratory, Turku Centre for Computer Science, Turku, Finland","institution_ids":["https://openalex.org/I183173800"]},{"raw_affiliation_string":"Department of Information Technologies, \u00c5bo Akademi University, Agora, Domkyrkotorget 3, Turku, 20500, Finland","institution_ids":["https://openalex.org/I130217899"]},{"raw_affiliation_string":"Computational Biomodeling Laboratory","institution_ids":[]},{"raw_affiliation_string":"Department of Information Technologies","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082298867","display_name":"Sepinoud Azimi","orcid":"https://orcid.org/0000-0002-4739-9560"},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sepinoud Azimi","raw_affiliation_strings":["Computational Biomodeling Laboratory, Turku Centre for Computer Science, Turku, Finland","Department of Information Technologies, \u00c5bo Akademi University, Agora, Domkyrkotorget 3, Turku, 20500, Finland","Computational Biomodeling Laboratory","Department of Information Technologies"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biomodeling Laboratory, Turku Centre for Computer Science, Turku, Finland","institution_ids":["https://openalex.org/I183173800"]},{"raw_affiliation_string":"Department of Information Technologies, \u00c5bo Akademi University, Agora, Domkyrkotorget 3, Turku, 20500, Finland","institution_ids":["https://openalex.org/I130217899"]},{"raw_affiliation_string":"Computational Biomodeling Laboratory","institution_ids":[]},{"raw_affiliation_string":"Department of Information Technologies","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047091186","display_name":"Ion Petre","orcid":"https://orcid.org/0000-0002-5014-5529"},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I4210114681","display_name":"National Institute for Research and Development in Informatics - ICI Bucharest","ror":"https://ror.org/028rq5v79","country_code":"RO","type":"facility","lineage":["https://openalex.org/I4210114681"]},{"id":"https://openalex.org/I4210115638","display_name":"National Institute of Research and Development for Biological Sciences","ror":"https://ror.org/028wkbm97","country_code":"RO","type":"facility","lineage":["https://openalex.org/I4210115638"]}],"countries":["FI","RO"],"is_corresponding":true,"raw_author_name":"Ion Petre","raw_affiliation_strings":["Computational Biomodeling Laboratory, Turku Centre for Computer Science, Turku, Finland","Department of Information Technologies, \u00c5bo Akademi University, Agora, Domkyrkotorget 3, Turku, 20500, Finland","National Institute for Research and Development in Biological Sciences, Bucharest, Romania","Computational Biomodeling Laboratory","Department of Information Technologies","National Institute of Research and Development for Biological Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biomodeling Laboratory, Turku Centre for Computer Science, Turku, Finland","institution_ids":["https://openalex.org/I183173800"]},{"raw_affiliation_string":"Department of Information Technologies, \u00c5bo Akademi University, Agora, Domkyrkotorget 3, Turku, 20500, Finland","institution_ids":["https://openalex.org/I130217899"]},{"raw_affiliation_string":"National Institute for Research and Development in Biological Sciences, Bucharest, Romania","institution_ids":["https://openalex.org/I4210114681","https://openalex.org/I4210115638"]},{"raw_affiliation_string":"Computational Biomodeling Laboratory","institution_ids":[]},{"raw_affiliation_string":"Department of Information Technologies","institution_ids":[]},{"raw_affiliation_string":"National Institute of Research and Development for Biological Sciences","institution_ids":["https://openalex.org/I4210115638"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5047091186"],"corresponding_institution_ids":["https://openalex.org/I130217899","https://openalex.org/I183173800","https://openalex.org/I4210114681","https://openalex.org/I4210115638"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12758799,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"170","last_page":"181"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5805225372314453},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.5001723766326904},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.40111243724823}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5805225372314453},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.5001723766326904},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.40111243724823}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-030-00265-7_14","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-00265-7_14","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:hal-01948642v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01948642","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lecture Notes in Computer Science, 11270, pp.170--181, 2018","raw_type":"info:eu-repo/semantics/bookPart"},{"id":"pmh:oai:pure.atira.dk:publications/906d5d2b-744c-4577-a8be-6bc1b3aa9d3d","is_oa":false,"landing_page_url":"https://link.springer.com/chapter/10.1007/978-3-030-00265-7_14","pdf_url":null,"source":{"id":"https://openalex.org/S4406923060","display_name":"\u00c5bo Akademi University Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Ivanov, S, Rogojin, V, Azimi Rashti, S & Petre, I 2018, WEBRSIM: A Web-Based Reaction Systems Simulator. in C Graciani, A Riscos-N\u00fa\u00f1ez, G P\u0103un, G Rozenberg & A Salomaa (eds), Enjoying Natural Computing. Springer, pp. 170\u2013181. https://doi.org/10.1007/978-3-030-00265-7_14","raw_type":"info:eu-repo/semantics/bookPart"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6899999976158142}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1488870785","https://openalex.org/W1489393069","https://openalex.org/W1547485105","https://openalex.org/W1576702025","https://openalex.org/W1972648361","https://openalex.org/W1992112582","https://openalex.org/W1995984957","https://openalex.org/W2002668213","https://openalex.org/W2017288340","https://openalex.org/W2057636423","https://openalex.org/W2063464435","https://openalex.org/W2141985408","https://openalex.org/W2215907076","https://openalex.org/W2609395391","https://openalex.org/W2610807660","https://openalex.org/W2745184079","https://openalex.org/W2788314953","https://openalex.org/W2911610547","https://openalex.org/W3021636636","https://openalex.org/W3094682183"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2130043461","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}
